Disease Information
General Information of the Disease (ID: DIS00052)
| Name |
Acute myeloid leukemia
|
|---|---|
| ICD |
ICD-11: 2A60
|
| Resistance Map |
Type(s) of Resistant Mechanism of This Disease
Drug Resistance Data Categorized by Drug
Investigative Drug(s)
1 drug(s) in total
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
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| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Anthracyclines | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | K562/ADR cells | Blood | Homo sapiens (Human) | CVCL_0004 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX8 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Anthracyclines | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | HL60/ADR cells | Blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX7 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Anthracyclines | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX6 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Anthracyclines | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | HL-60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX5 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Anthracyclines | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | KG-1 A cells | Blood | Homo sapiens (Human) | CVCL_0374 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX4 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Anthracyclines | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vivo Model | HCC patients | Homo Sapiens | ||
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
Approved Drug(s)
31 drug(s) in total
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | KG-1 A cells | Blood | Homo sapiens (Human) | CVCL_0374 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX9 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | K562/ADR cells | Blood | Homo sapiens (Human) | CVCL_0004 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX13 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | HL60/ADR cells | Blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX12 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX11 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vitro Model | HL-60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we find that TGFB1 levels are elevated in relapsed or refractory AML patients and in drug-resistant cell lines, and can induce chemoresistance by stimulating the activation of the TGFB signaling pathway via an autocrine/paracrine manner. This process may be achieved through metabolic reprogramming induced by TGFB1-triggered SOX10 expression. | |||
| Key Molecule: Transforming growth factor beta 1 (TGFB1) | [1] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myeloid leukemia | |||
| The Studied Tissue | Blood | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.40E-07 Fold-change: 6.20E-01 Z-score: 6.08E+00 |
|||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | TGF-beta signaling pathway | Activation | hsa04350 | |
| In Vivo Model | HCC patients | Homo Sapiens | ||
| Experiment for Molecule Alteration |
qRT-PCR; Western blot analysis | |||
| Key Molecule: Cytochrome P450 family 1 subfamily A member 1 (CYP1A1) | [16] | |||
| Metabolic Type | Mitochondrial metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cushing syndrome | Activation | hsa04934 | |
| In Vitro Model | SHI-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_2191 |
| Skm1 cells | Blood | Homo sapiens (Human) | CVCL_0098 | |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
Cell viability assay | |||
| Mechanism Description | The data analysis reveals that the AHR signaling pathway is activated in AML patients. Furthermore, there is a correlation between the expressions of AHR and mitochondrial oxidative phosphorylation genes.In vitroexperiments show that enhancing AHR expression in AML cells increases mitochondrial oxidative phosphorylation and induces resistance to cytarabine. Conversely, reducing AHR expression in AML cells decreases cytarabine resistance. | |||
| Key Molecule: Cytochrome P450 family 1 subfamily B member 1 (CYP1B1) | [16] | |||
| Metabolic Type | Mitochondrial metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cushing syndrome | Activation | hsa04934 | |
| In Vitro Model | SHI-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_2191 |
| Skm1 cells | Blood | Homo sapiens (Human) | CVCL_0098 | |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
Cell viability assay | |||
| Mechanism Description | The data analysis reveals that the AHR signaling pathway is activated in AML patients. Furthermore, there is a correlation between the expressions of AHR and mitochondrial oxidative phosphorylation genes.In vitroexperiments show that enhancing AHR expression in AML cells increases mitochondrial oxidative phosphorylation and induces resistance to cytarabine. Conversely, reducing AHR expression in AML cells decreases cytarabine resistance. | |||
| Key Molecule: Isocitrate dehydrogenase [NADP] mitochondrial (IDH2) | [17] | |||
| Metabolic Type | Glucose metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Mutation | . |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Longevity regulating pathway - multiple species | Activation | hsa04213 | |
| In Vitro Model | AML cells | N.A. | Homo sapiens (Human) | N.A. |
| HL-60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| IDH2 mutant AML cells | Blood | Homo sapiens (Human) | CVCL_S481 | |
| KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 | |
| Experiment for Drug Resistance |
IC50 assay | |||
| Mechanism Description | The increase in glycolysis levels following IDH2 mutation may contribute to the reduced efficacy of Enasidenib in inhibiting the proliferation of IDH-mutant AML cells. | |||
| Key Molecule: Isocitrate dehydrogenase [NADP] mitochondrial (IDH2) | [17] | |||
| Metabolic Type | Glucose metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Mutation | . |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Longevity regulating pathway - multiple species | Activation | hsa04213 | |
| In Vivo Model | AML cell-transplanted tumor nude mice with IDH2 mutations | Mice | ||
| Experiment for Drug Resistance |
Tumor volume assay | |||
| Mechanism Description | The increase in glycolysis levels following IDH2 mutation may contribute to the reduced efficacy of Enasidenib in inhibiting the proliferation of IDH-mutant AML cells. | |||
|
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| Key Molecule: hsa-mir-335 | [15] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell invasion | Activation | hsa05200 | ||
| Cell migration | Activation | hsa04670 | ||
| Cell proliferation | Activation | hsa05200 | ||
| Nodal/TFG-alpha signaling pathway | Regulation | N.A. | ||
| Wnt/alpha -catenin signaling pathway | Regulation | N.A. | ||
| Experiment for Molecule Alteration |
RT-qPCR | |||
| Experiment for Drug Resistance |
Relapse-free survival and overall survival assay | |||
| Mechanism Description | The expression levels of miR-335 in bone marrow and serum samples from adult patients with AML (except M3) were significantly associated with the Ara-C-based chemotherapy response and clinical outcome after treatment. | |||
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| Key Molecule: Isocitrate dehydrogenase NADP 2 (IDH2) | [18] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | PI3K/Akt/mTOR signaling pathway | Regulation | N.A. | |
| In Vitro Model | HL-60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 | |
| In Vivo Model | SPF-grade (BALB/C) nude mice model | Mus musculus | ||
| Experiment for Molecule Alteration |
RT-qPCR; Glycolysis metabolic enzyme assay; Flow cytometry; Western blot assay; Transcriptome sequencingc assay | |||
| Experiment for Drug Resistance |
Cell proliferation assay; Drug sensitivity testing | |||
| Mechanism Description | OE-IDH2 in AML cells, enhances resistance to the Ara-C, promotes cell proliferation and glycolysis, and inhibits apoptosis. KD-IDH2 exhibits opposite effects. Both IDH2 mutations and OE-IDH2 produce similar effects on these cellular processes. The increase in glycolysis levels following IDH2 mutation may contribute to the reduced efficacy of Enasidenib in inhibiting the proliferation of IDH-mutant AML cells. Transcriptome sequencing results indicate an enrichment of the PI3K/Akt signaling pathway in IDH2-mutant AML cells. BEZ235 significantly inhibits the expression of phosphorylated PI3K (p-PI3K), phosphorylated Akt (p-Akt), mTOR, glycolytic metabolism, and Ara-C resistance both in vitro and in vivo. Overexpression and mutation of IDH2 coordinate with the Warburg effect through the PI3K/Akt/mTOR pathway to promote Ara-C resistance in AML. | |||
| Key Molecule: Isocitrate dehydrogenase [NADP] mitochondrial (IDH2) | [18] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Mutation | . |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | PI3K-Akt signaling pathway | Activation | hsa04151 | |
| In Vitro Model | HL-60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 | |
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | The IDH2 mutations are involved in Ara-C resistance by affecting the process of glycolysis in AML, and the PI3K-Akt signaling pathway plays an important role in this process. These pathways are expected to be important targets for targeted therapeutic intervention in the AML setting. | |||
| Key Molecule: Acetyl-CoA acetyltransferase 2 (ACAT2) | [19] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | DNA Damage Response Mechanism | Regulation | N.A. | |
| In Vitro Model | MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 |
| MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
RT-qPCR; Western blot assay | |||
| Experiment for Drug Resistance |
MTT assay; Trypan blue assay; Clonogenicity assay; IC50 assay; Flow cytometry assay | |||
| Mechanism Description | DNA Damage Response Mechanism (DDR) comprises numerous molecules and pathways intended to arrest the cell cycle until DNA damage is repaired or else drive the cell to apoptosis.DDR regulators demonstrate increased expression in patients with high cytogenetic risk possibly reflecting increased genotoxic stress. Especially, PPP1R15A is mainly involved in the recovery of the cells from stress and it was the only DDR gene upregulated in AML patients. | |||
| Key Molecule: Acetyl-CoA acetyltransferase 2 (ACAT2) | [19] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | DNA Damage Response Mechanism | Regulation | N.A. | |
| In Vitro Model | MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 |
| MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
RT-qPCR; Western blot assay | |||
| Experiment for Drug Resistance |
MTT assay; Trypan blue assay; Clonogenicity assay; IC50 assay; Flow cytometry assay | |||
| Mechanism Description | DNA Damage Response Mechanism (DDR) comprises numerous molecules and pathways intended to arrest the cell cycle until DNA damage is repaired or else drive the cell to apoptosis.DDR regulators demonstrate increased expression in patients with high cytogenetic risk possibly reflecting increased genotoxic stress.Using PCR arrays we observed an upregulation of of several DDR genes (CDKN1A, GADD45A, GADD45G, EXO1, and PPP1R15A) in KASUMI-1 and MV4-11 cell lines that survived following treatment with Idarubicin and Cytarabine. | |||
| Key Molecule: Growth arrest and DNA damage-inducible protein GADD45 gamma (GADD45G) | [19] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | DNA Damage Response Mechanism | Regulation | N.A. | |
| In Vitro Model | MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 |
| MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
RT-qPCR; Western blot assay | |||
| Experiment for Drug Resistance |
MTT assay; Trypan blue assay; Clonogenicity assay; IC50 assay; Flow cytometry assay | |||
| Mechanism Description | DNA Damage Response Mechanism (DDR) comprises numerous molecules and pathways intended to arrest the cell cycle until DNA damage is repaired or else drive the cell to apoptosis.DDR regulators demonstrate increased expression in patients with high cytogenetic risk possibly reflecting increased genotoxic stress.Using PCR arrays we observed an upregulation of of several DDR genes (CDKN1A, GADD45A, GADD45G, EXO1, and PPP1R15A) in KASUMI-1 and MV4-11 cell lines that survived following treatment with Idarubicin and Cytarabine. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Programmed cell death protein 4 (PDCD4) | [3] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 4.63E-03 Fold-change: 7.01E-02 Z-score: 2.85E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | AMO-miR-21 significantly sensitizes HL60 cells to Ara-C byinducing apoptosis and these effects of AMO-miR-21 may be partially due to its up-regulation ofPDCD4. | |||
| Key Molecule: High mobility group protein B1 (HMGB1) | [7] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 3.67E-02 Fold-change: -9.69E-03 Z-score: -2.10E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell migration | Inhibition | hsa04670 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | The ectopic expression of miR-181b in k562/A02 and HL-60/ADM cells robustly suppressed endogenous HMGB1 and Mcl-1 expression both at mRNA and protein levels. Conversely, knockdown of miR-181b by miR-181b inhibitor markedly increased the expression of both HMGB1 and Mcl-1. Restoration of miR-181b increased the drug sensitivity of AML MDR cells by targeting HMGB1 and Mcl-1. | |||
| Key Molecule: Klotho (KL) | [20] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | AKTsignaling pathway | Inhibition | hsa04151 | |
| Cell apoptosis | Activation | hsa04210 | ||
| Cell proliferation | Inhibition | hsa05200 | ||
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| HK-2 cells | Kidney | Homo sapiens (Human) | CVCL_0302 | |
| Experiment for Molecule Alteration |
RT-PCR; Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Transfection of the mimic miR-126-5p into the AML cell line, kG-1, resulted in a decrease in the sensitivity to cytarabin and the expression level of klotho mRNA as well as the elevation in the phosphorylation of Akt. The results of the present study demonstrated that higher expression levels of miR-126-5p/3p in patients with AML resulted in a poorer prognosis. Furthermore, miR-126-5p elevated the phosphorylation of Akt. | |||
| Key Molecule: Induced myeloid leukemia cell differentiation protein Mcl-1 (MCL1) | [7] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell migration | Inhibition | hsa04670 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | The ectopic expression of miR-181b in k562/A02 and HL-60/ADM cells robustly suppressed endogenous HMGB1 and Mcl-1 expression both at mRNA and protein levels. Conversely, knockdown of miR-181b by miR-181b inhibitor markedly increased the expression of both HMGB1 and Mcl-1. Restoration of miR-181b increased the drug sensitivity of AML MDR cells by targeting HMGB1 and Mcl-1. | |||
|
|
||||
| Key Molecule: hsa-miR-126-5p | [20] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | AKTsignaling pathway | Inhibition | hsa04151 | |
| Cell apoptosis | Activation | hsa04210 | ||
| Cell proliferation | Inhibition | hsa05200 | ||
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| HK-2 cells | Kidney | Homo sapiens (Human) | CVCL_0302 | |
| Experiment for Molecule Alteration |
RT-PCR | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Transfection of the mimic miR-126-5p into the AML cell line, kG-1, resulted in a decrease in the sensitivity to cytarabin and the expression level of klotho mRNA as well as the elevation in the phosphorylation of Akt. The results of the present study demonstrated that higher expression levels of miR-126-5p/3p in patients with AML resulted in a poorer prognosis. Furthermore, miR-126-5p elevated the phosphorylation of Akt. | |||
| Key Molecule: hsa-mir-181 | [7] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell migration | Inhibition | hsa04670 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| In Vivo Model | Nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | The ectopic expression of miR-181b in k562/A02 and HL-60/ADM cells robustly suppressed endogenous HMGB1 and Mcl-1 expression both at mRNA and protein levels. Conversely, knockdown of miR-181b by miR-181b inhibitor markedly increased the expression of both HMGB1 and Mcl-1. Restoration of miR-181b increased the drug sensitivity of AML MDR cells by targeting HMGB1 and Mcl-1. | |||
| Key Molecule: hsa-let-7a | [21] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell growth | Activation | hsa05200 | |
| Cell invasion | Activation | hsa05200 | ||
| Epithelial mesenchymal transition signaling pathway | Activation | hsa01521 | ||
| In Vitro Model | Molm13 cells | Blood | Homo sapiens (Human) | CVCL_2119 |
| OCI-AML3 cells | Blood | Homo sapiens (Human) | CVCL_1844 | |
| In Vivo Model | AML nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
RT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | Xenografts of primary human AML cells engineered to overexpress let-7a exhibited enhanced sensitivity to cytarabine. | |||
| Key Molecule: Bcl-2-like protein 11 (BCL2L11) | [22] | |||
| Sensitive Disease | Myeloid leukemia [ICD-11: 2A60.4] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | One of the predicted targets of miR-32 lies in the 3' untranslated region (UTR) of BCL2L11 gene, which encodes the pro-apoptotic protein Bim, miR-32 blockade is sufficient to elevate Bim expression and sensitize AML cells to chemotherapy-induced apoptosis. | |||
| Key Molecule: hsa-mir-32 | [22] | |||
| Sensitive Disease | Myeloid leukemia [ICD-11: 2A60.4] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | One of the predicted targets of miR-32 lies in the 3' untranslated region (UTR) of BCL2L11 gene, which encodes the pro-apoptotic protein Bim, miR-32 blockade is sufficient to elevate Bim expression and sensitize AML cells to chemotherapy-induced apoptosis. | |||
| Key Molecule: hsa-mir-21 | [3] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cytarabine | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
RT-PCR | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | AMO-miR-21 significantly sensitizes HL60 cells to Ara-C byinducing apoptosis and these effects of AMO-miR-21 may be partially due to its up-regulation ofPDCD4. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Multidrug resistance protein 1 (ABCB1) | [2] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Ketorolac | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 4.70E-06 Fold-change: 9.31E-02 Z-score: 4.63E+00 |
|||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Experiment for Molecule Alteration |
Efflux pump genes expression analysis | |||
| Mechanism Description | Ketorolac-fluconazole in vitro combination would be a promising strategy for further clinical in vivo trials to overcome fluconazole resistance in AML patients on induction chemotherapy. To our knowledge, the current study is the first in vitro report on the use of ketorolac in reverting fluconazole resistance in C. albicans isolated from AML patients. Resistance of C. albicans to azole antifungals is associated with overexpression of efflux pump genes especially CDR1 and MDR1. | |||
|
|
||||
| Key Molecule: hsa_circ_0001946 | [2] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Ketorolac | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Experiment for Molecule Alteration |
Efflux pump genes expression analysis | |||
| Mechanism Description | Ketorolac-fluconazole in vitro combination would be a promising strategy for further clinical in vivo trials to overcome fluconazole resistance in AML patients on induction chemotherapy. To our knowledge, the current study is the first in vitro report on the use of ketorolac in reverting fluconazole resistance in C. albicans isolated from AML patients. Resistance of C. albicans to azole antifungals is associated with overexpression of efflux pump genes especially CDR1 and MDR1. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Hexokinase-2 (HK2) | [5] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.29E-13 Fold-change: 1.01E-01 Z-score: 7.67E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell viability | Activation | hsa05200 | |
| miR125a/hexokinase 2 pathway | Regulation | N.A. | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Hk2, a target of miR-125a, was positively regulated by uca1 in HL60, and HL60/ADR cells,and UCA1 overexpression significantly attenuated miR-125-mediated inhibition on HIF-1alpha-dependent glycolysis in HL60 and HL60/ADR cells. | |||
| Key Molecule: Protein S100-A4 (S100A4) | [29] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell proliferation | Activation | hsa05200 | ||
| miR520c-3p/S100A4 signaling pathway | Regulation | N.A. | ||
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| In Vivo Model | Nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
qRT-PCR; Luciferase reporter assay | |||
| Experiment for Drug Resistance |
CCK8 assay; Flow cytometry assay | |||
| Mechanism Description | HOXA-AS2 Can enhance S100A4 expression by suppressing miR-520c-3p expression to promote adriamycin resistance in acute myeloid leukemia through the miR-520c-3p /S100A4 pathway. | |||
| Key Molecule: E3 ubiquitin-protein ligase XIAP (XIAP) | [30] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| Experiment for Molecule Alteration |
Western blot analysis; RT-qPCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | CircPAN3 mediates drug resistance in acute myeloid leukemia through the miR-153-5p/miR-183-5p-XIAP axis. | |||
| Key Molecule: RAC serine/threonine-protein kinase (AKT) | [31] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Phosphorylation | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell colony | Activation | hsa05200 | ||
| Cell invasion | Activation | hsa05200 | ||
| Cell viability | Activation | hsa05200 | ||
| PI3K/AKT/mTOR signaling pathway | Activation | hsa04151 | ||
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay; TUNEL assay; Flow cytometry assay | |||
| Mechanism Description | Long non coding RNA linc00239 promotes malignant behaviors and chemoresistance against doxorubicin partially via activation of the PI3k/Akt/mTOR pathway in acute myeloid leukaemia cells. | |||
|
|
||||
| Key Molecule: hsa-mir-34 | [28] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| HS-5 cells | Bone marrow | Homo sapiens (Human) | CVCL_3720 | |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometry assay | |||
| Mechanism Description | TUG1 epigenetically suppressed miR-34a expression by recruiting EZH2 to the promoter region of miR-34a and increasing H3k27me3 level to confer adriamycin resistance in acute myeloid leukemia. | |||
| Key Molecule: Taurine up-regulated 1 (TUG1) | [28] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| HS-5 cells | Bone marrow | Homo sapiens (Human) | CVCL_3720 | |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometry assay | |||
| Mechanism Description | TUG1 epigenetically suppressed miR-34a expression by recruiting EZH2 to the promoter region of miR-34a and increasing H3k27me3 level to confer adriamycin resistance in acute myeloid leukemia. | |||
| Key Molecule: hsa-miR-520c-3p | [29] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell proliferation | Activation | hsa05200 | ||
| miR520c-3p/S100A4 signaling pathway | Regulation | N.A. | ||
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| In Vivo Model | Nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay; Flow cytometry assay | |||
| Mechanism Description | HOXA-AS2 Can enhance S100A4 expression by suppressing miR-520c-3p expression to promote adriamycin resistance in acute myeloid leukemia through the miR-520c-3p /S100A4 pathway. | |||
| Key Molecule: HOXA cluster antisense RNA 2 (HOXA-AS2) | [29] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell proliferation | Activation | hsa05200 | ||
| miR520c-3p/S100A4 signaling pathway | Regulation | N.A. | ||
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| In Vivo Model | Nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay; Flow cytometry assay | |||
| Mechanism Description | HOXA-AS2 Can enhance S100A4 expression by suppressing miR-520c-3p expression to promote adriamycin resistance in acute myeloid leukemia through the miR-520c-3p /S100A4 pathway. | |||
| Key Molecule: hsa-miR-153-5p | [30] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | CircPAN3 mediates drug resistance in acute myeloid leukemia through the miR-153-5p/miR-183-5p-XIAP axis. | |||
| Key Molecule: hsa-miR-183-5p | [30] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | CircPAN3 mediates drug resistance in acute myeloid leukemia through the miR-153-5p/miR-183-5p-XIAP axis. | |||
| Key Molecule: Long non-protein coding RNA 239 (LINC00239) | [31] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell colony | Activation | hsa05200 | ||
| Cell invasion | Activation | hsa05200 | ||
| Cell migration | Activation | hsa04670 | ||
| Cell proliferation | Activation | hsa05200 | ||
| Cell viability | Activation | hsa05200 | ||
| PI3K/AKT/mTOR signaling pathway | Activation | hsa04151 | ||
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| Experiment for Molecule Alteration |
RT-qPCR | |||
| Experiment for Drug Resistance |
CCK8 assay; TUNEL assay; Flow cytometry assay | |||
| Mechanism Description | Long non coding RNA linc00239 promotes malignant behaviors and chemoresistance against doxorubicin partially via activation of the PI3k/Akt/mTOR pathway in acute myeloid leukaemia cells. | |||
| Key Molecule: Urothelial cancer associated 1 (UCA1) | [5] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell viability | Activation | hsa05200 | |
| miR125a/hexokinase 2 pathway | Regulation | N.A. | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
qPCR | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Hk2, a target of miR-125a, was positively regulated by uca1 in HL60, and HL60/ADR cells,and UCA1 overexpression significantly attenuated miR-125-mediated inhibition on HIF-1alpha-dependent glycolysis in HL60 and HL60/ADR cells. | |||
| Key Molecule: hsa-mir-125b | [32] | |||
| Resistant Disease | Acute promyelocytic leukemia [ICD-11: 2A60.2] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell proliferation | Activation | hsa05200 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| NB4 cells | Bone marrow | Homo sapiens (Human) | CVCL_0005 | |
| In Vivo Model | BALB/c nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | miR-125b could promote leukemic cell proliferation and inhibit cell apoptosis by regulating the expression of tumor suppressor BCL2-antagonist/killer 1 (Bak1). transfection of a miR-125b duplex into AML cells can increase their resistance to therapeutic drugs. | |||
|
|
||||
| Key Molecule: Rho associated coiled-coil containing protein kinase 2 (ROCK2) | [33] | |||
| Metabolic Type | Glucose metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | MAPK signaling pathway | Activation | hsa04010 | |
| PI3K-Akt signaling pathway | Activation | hsa04151 | ||
| In Vitro Model | HL-60/ADM cells | Blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In this study, we found that there was a pronounced upregulation of ROCK2 in AML cells. Suppressing ROCK2 significantly boosts the effectiveness of drugs in both AML cell lines and primary AML specimens while causing a substantial decrease in the activation of MAPK and PI3K/AKT pathways. | |||
| Key Molecule: Carbonic anhydrase 13 (CA13) | [34] | |||
| Metabolic Type | Lipid metabolism | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | HL-60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| THP1 cells | Pleural effusion | Homo sapiens (Human) | CVCL_0006 | |
| Experiment for Drug Resistance |
IC50 assay | |||
| Mechanism Description | CA13is involved in cellular pH regulation, carbon dioxide transport, and cell homeostasis. Abnormalities in these processes can affect the tumor microenvironment, influencing cancer cell survival, proliferation, and resistance to therapy | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: GTPase KRas (KRAS) | [6] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 9.27E-01 Fold-change: -7.42E-04 Z-score: -9.16E-02 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell proliferation | Inhibition | hsa05200 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| Experiment for Molecule Alteration |
Dual luciferase reporter assay; Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometric analysis | |||
| Mechanism Description | microRNA 217 inhibits cell proliferation and enhances chemosensitivity to doxorubicin in acute myeloid leukemia by targeting kRAS. | |||
| Key Molecule: Hexokinase-2 (HK2) | [5] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell viability | Inhibition | hsa05200 | |
| miR125a/hexokinase 2 pathway | Regulation | N.A. | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Hk2, a target of miR-125a, was positively regulated by uca1 in HL60, and HL60/ADR cells,and UCA1 overexpression significantly attenuated miR-125-mediated inhibition on HIF-1alpha-dependent glycolysis in HL60 and HL60/ADR cells. | |||
| Key Molecule: High mobility group protein B1 (HMGB1) | [7] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell migration | Inhibition | hsa04670 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | The ectopic expression of miR-181b in k562/A02 and HL-60/ADM cells robustly suppressed endogenous HMGB1 and Mcl-1 expression both at mRNA and protein levels. Conversely, knockdown of miR-181b by miR-181b inhibitor markedly increased the expression of both HMGB1 and Mcl-1. Restoration of miR-181b increased the drug sensitivity of AML MDR cells by targeting HMGB1 and Mcl-1. | |||
| Key Molecule: Induced myeloid leukemia cell differentiation protein Mcl-1 (MCL1) | [7] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell migration | Inhibition | hsa04670 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | The ectopic expression of miR-181b in k562/A02 and HL-60/ADM cells robustly suppressed endogenous HMGB1 and Mcl-1 expression both at mRNA and protein levels. Conversely, knockdown of miR-181b by miR-181b inhibitor markedly increased the expression of both HMGB1 and Mcl-1. Restoration of miR-181b increased the drug sensitivity of AML MDR cells by targeting HMGB1 and Mcl-1. | |||
|
|
||||
| Key Molecule: hsa_circ_PAN3 | [30] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | CircPAN3 mediates drug resistance in acute myeloid leukemia through the miR-153-5p/miR-183-5p-XIAP axis. | |||
| Key Molecule: hsa-miR-153-5p | [30] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | CircPAN3 mediates drug resistance in acute myeloid leukemia through the miR-153-5p/miR-183-5p-XIAP axis. | |||
| Key Molecule: hsa-miR-183-5p | [30] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| In Vitro Model | THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | CircPAN3 mediates drug resistance in acute myeloid leukemia through the miR-153-5p/miR-183-5p-XIAP axis. | |||
| Key Molecule: hsa-mir-217 | [6] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell proliferation | Inhibition | hsa05200 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| Experiment for Molecule Alteration |
qPCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometric analysis | |||
| Mechanism Description | microRNA 217 inhibits cell proliferation and enhances chemosensitivity to doxorubicin in acute myeloid leukemia by targeting kRAS. | |||
| Key Molecule: Urothelial cancer associated 1 (UCA1) | [5] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell viability | Inhibition | hsa05200 | |
| miR125a/hexokinase 2 pathway | Regulation | N.A. | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Hk2, a target of miR-125a, was positively regulated by uca1 in HL60, and HL60/ADR cells,and UCA1 overexpression significantly attenuated miR-125-mediated inhibition on HIF-1alpha-dependent glycolysis in HL60 and HL60/ADR cells. | |||
| Key Molecule: hsa-mir-181 | [7] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Doxorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell migration | Inhibition | hsa04670 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| In Vivo Model | Nude mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | The ectopic expression of miR-181b in k562/A02 and HL-60/ADM cells robustly suppressed endogenous HMGB1 and Mcl-1 expression both at mRNA and protein levels. Conversely, knockdown of miR-181b by miR-181b inhibitor markedly increased the expression of both HMGB1 and Mcl-1. Restoration of miR-181b increased the drug sensitivity of AML MDR cells by targeting HMGB1 and Mcl-1. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Eukaryotic translation initiation factor 5A-2 (EIF5A2) | [9] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Daunorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 3.74E-03 Fold-change: -4.62E-02 Z-score: -2.92E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell proliferation | Inhibition | hsa05200 | ||
| Cell viability | Inhibition | hsa05200 | ||
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay; EdU assay; Flow cytometry assay | |||
| Mechanism Description | miR-9 improved the anti-tumor effects of Dnr by inhibiting myeloid cell leukemia-1 (MCL-1) expression, which was dependent on downregulation of EIF5A2 expression. | |||
| Key Molecule: Induced myeloid leukemia cell differentiation protein Mcl-1 (MCL1) | [25] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Daunorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| Experiment for Molecule Alteration |
Western blot analysis; RT-qPCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometry assay | |||
| Mechanism Description | MCL-1 participates in the regulation of DNR sensitivity mediated by miR-33b and overexpression of miR-33b enhances DNR sensitivity by downregulating MCL-1 in AML cells. | |||
| Key Molecule: Eukaryotic translation initiation factor 5A-2 (EIF5A2) | [25] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Daunorubicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| Experiment for Molecule Alteration |
Western blot analysis; RT-qPCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometry assay | |||
| Mechanism Description | microRNA-33b regulates sensitivity to daunorubicin in acute myelocytic leukemia by regulating eukaryotic translation initiation factor 5A-2. | |||
|
|
||||
| Key Molecule: hsa-mir-33b | [25] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Daunorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometry assay | |||
| Mechanism Description | MCL-1 participates in the regulation of DNR sensitivity mediated by miR-33b and overexpression of miR-33b enhances DNR sensitivity by downregulating MCL-1 in AML cells. | |||
| Key Molecule: hsa-mir-9 | [9] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Daunorubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell proliferation | Inhibition | hsa05200 | ||
| Cell viability | Inhibition | hsa05200 | ||
| In Vitro Model | KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| Experiment for Molecule Alteration |
qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay; EdU assay; Flow cytometry assay | |||
| Mechanism Description | miR-9 improved the anti-tumor effects of Dnr by inhibiting myeloid cell leukemia-1 (MCL-1) expression, which was dependent on downregulation of EIF5A2 expression. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | |||||||||||||
|
|
|||||||||||||
| Key Molecule: DNA (cytosine-5)-methyltransferase 3A (DNMT3A) | [23] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Daunorubicin | ||||||||||||
| Molecule Alteration | Missense mutation | p.R882H |
|||||||||||
| Wild Type Structure | Method: X-ray diffraction | Resolution: 2.40 Ã… | |||||||||||
| Mutant Type Structure | Method: X-ray diffraction | Resolution: 2.44 Ã… | |||||||||||
| Download The Information of Sequence | Download The Structure File | ||||||||||||
-
A
A
E
E
630
|
K
K
R
R
K
K
P
P
I
I
R
R
V
V
L
L
S
S
L
L
640
|
F
F
D
D
G
G
I
I
A
A
T
T
G
G
L
L
L
L
V
V
650
|
L
L
K
K
D
D
L
L
G
G
I
I
Q
Q
V
V
D
D
R
R
660
|
Y
Y
I
I
A
A
S
S
E
E
V
V
C
C
E
E
D
D
S
S
670
|
I
I
T
T
V
V
G
G
M
M
V
V
R
R
H
H
Q
Q
G
G
680
|
K
K
I
I
M
M
Y
Y
V
V
G
G
D
D
V
V
R
R
S
S
690
|
V
V
T
T
Q
Q
K
K
H
H
I
I
Q
Q
E
E
W
W
G
G
700
|
P
P
F
F
D
D
L
L
V
V
I
I
G
G
G
G
S
S
P
P
710
|
C
C
N
N
D
D
L
L
S
S
I
I
V
V
N
N
P
P
A
A
720
|
R
R
K
K
G
G
L
L
Y
Y
E
E
G
G
T
T
G
G
R
R
730
|
L
L
F
F
F
F
E
E
F
F
Y
Y
R
R
L
L
L
L
H
H
740
|
D
D
A
A
R
R
P
P
K
K
E
E
G
G
D
D
D
D
R
R
750
|
P
P
F
F
F
F
W
W
L
L
F
F
E
E
N
N
V
V
V
V
760
|
A
A
M
M
G
G
V
V
S
S
D
D
K
K
R
R
D
D
I
I
770
|
S
S
R
R
F
F
L
L
E
E
S
S
N
N
P
P
V
V
M
M
780
|
I
I
D
D
A
A
K
K
E
E
V
V
S
S
A
A
A
A
H
H
790
|
R
R
A
A
R
R
Y
Y
F
F
W
W
G
G
N
N
L
L
P
P
800
|
G
G
M
M
N
N
R
R
P
P
L
L
A
A
S
S
T
T
V
V
810
|
N
N
D
D
K
K
L
L
E
E
L
L
Q
Q
E
E
C
C
L
L
820
|
E
E
H
H
G
G
R
R
I
I
A
A
K
K
F
F
S
S
K
K
830
|
V
V
R
R
T
T
I
I
T
T
T
T
R
R
S
S
N
N
S
S
840
|
I
I
K
K
Q
Q
G
G
K
K
D
D
Q
Q
H
H
F
F
P
P
850
|
V
V
F
F
M
M
N
N
E
E
K
K
E
E
D
D
I
I
L
L
860
|
W
W
C
C
T
T
E
E
M
M
E
E
R
R
V
V
F
F
G
G
870
|
F
F
P
P
V
V
H
H
Y
Y
T
T
D
D
V
V
S
S
N
N
880
|
M
M
S
S
R
H
L
L
A
A
R
R
Q
Q
R
R
L
L
L
L
890
|
G
G
R
R
S
S
W
W
S
S
V
V
P
P
V
V
I
I
R
R
900
|
H
H
L
L
F
F
A
A
P
P
L
L
K
K
E
E
Y
Y
F
F
910
|
A
A
C
C
V
V
|
|||||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Cell Pathway Regulation | ADAM9/EGFR signaling pathway | Inhibition | hsa01521 | ||||||||||
| AKT signaling pathway | Inhibition | hsa04151 | |||||||||||
| Experiment for Molecule Alteration |
Next-generation sequencing assay | ||||||||||||
| Mechanism Description | DNMT3A mutations are most common in AML. DNMT3A mutant AML has been linked to anthracycline resistance and poor prognosis in some studies. Many of these mutations occur in genes with established roles in the regulation and maintenance of DNA methylation and/or chromatin modifications in hematopoietic stem/progenitor cells. | ||||||||||||
|
|
|||||||||||||
| Key Molecule: C-C motif chemokine 20 (CCL20) | [24] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Daunorubicin | ||||||||||||
| Molecule Alteration | Expression | Up-regulation |
|||||||||||
| Experiment for Molecule Alteration |
ELISA assay | ||||||||||||
| Mechanism Description | Our study has identified CCL20 as a pivotal factor in the promotion of chemoresistance in AML cells by M2 macrophages. The chemotherapeutic agent daunorubicin induces a marked increase in ROS and lipid peroxidation levels within AML cells. This is accompanied by the inhibition of the SLC7A11/GCL/GPX4 signaling axis, elevated levels of intracellular free iron, disrupted iron metabolism, and consequent mitochondrial damage, ultimately leading to ferroptosis. Notably, CCL20 enhances the ability of AML cells to maintain iron homeostasis by upregulating SLC7A11 protein activity, mitigating mitochondrial damage, and inhibiting ferroptosis, thereby contributing to chemotherapy resistance. Furthermore, in vivo experiments demonstrated that blocking CCL20 effectively restores the sensitivity of AML cells to daunorubicin chemotherapy. | ||||||||||||
|
|
|||||||||||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [10] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Daunorubicin | ||||||||||||
| Molecule Alteration | Mutation | . |
|||||||||||
| Experimental Note | Revealed Based on the Cell Line Data | ||||||||||||
| Cell Pathway Regulation | MAPK-RSKs-YB-1 signaling pathway | Regulation | N.A. | ||||||||||
| In Vitro Model | MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |||||||||
| MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | ||||||||||
| Experiment for Drug Resistance |
Cell viability assay; Colony formation assay; Annexin-V/7-AAD double stain assay | ||||||||||||
| Mechanism Description | LJH-685 inhibited the proliferation and clone formation of AML cells, caused cell cycle arrest and induced the apoptosis of AML cells via inhibiting the RSK-YB-1 signaling pathway. MV4-11 and MOLM-13 cells carrying FLT3-ITD mutations were more sensitive to LJH-685 than that of other AML cell lines. Further studies suggested that LJH-685 combined with Daunorubicin or FF- 10101 synergistically inhibited the cell viability, promoted the apoptosis and caused cycle arrest of AML cells carrying FLT3-ITD mutations. | ||||||||||||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: hsa-mir-204 | [12] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Arsenic trioxide | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cancer progression | Inhibition | hsa05200 | |
| In Vitro Model | AML-5 cells | Peripheral blood | Homo sapiens (Human) | CVCL_1620 |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| Experiment for Molecule Alteration |
RT-qPCR | |||
| Experiment for Drug Resistance |
CCK8 assay; Flow cytometry assay | |||
| Mechanism Description | miR-204 decreases ATO chemoresistance in AML cells at least partially via promoting BIRC6/p53-mediated apoptosis. | |||
|
|
||||
| Key Molecule: Baculoviral IAP repeat-containing protein 6 (BIRC6) | [12] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Arsenic trioxide | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | BIRC6/p53-mediated apoptosis signaling pathway | Activation | hsa04210 | |
| In Vitro Model | AML-5 cells | Peripheral blood | Homo sapiens (Human) | CVCL_1620 |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| Experiment for Molecule Alteration |
Western blot analysis; RT-qPCR | |||
| Experiment for Drug Resistance |
CCK8 assay; Flow cytometry assay | |||
| Mechanism Description | miR-204 decreases ATO chemoresistance in AML cells at least partially via promoting BIRC6/p53-mediated apoptosis. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [13] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Avapritinib | |||
| Molecule Alteration | Missense mutation | p.N822K (c.2466T>G) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 |
| HMC-1.2 cells | Blood | Homo sapiens (Human) | CVCL_H205 | |
| P815 cells | N.A. | Mus musculus (Mouse) | CVCL_2154 | |
| M-07e cells | Peripheral blood | Homo sapiens (Human) | CVCL_2106 | |
| HMC-1.1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_H206 | |
| Chinese hamster ovary (CHO)-K1 cells | Ovary | Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) | CVCL_0214 | |
| In Vivo Model | BALB/c nude mouse PDX model | Mus musculus | ||
| Experiment for Molecule Alteration |
Immunoblotting analysis | |||
| Experiment for Drug Resistance |
Enzyme-linked immunosorbent assay; Cellular proliferation test assay | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Cysteine and glycine-rich protein 1 (CSRP1) | [14] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Cisplatin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Cell Pathway Regulation | Rap1 signaling pathway | Activation | hsa04015 | |
| HIF-1 signaling pathway | Activation | hsa04066 | ||
| JAK-STAT signaling pathway | Activation | hsa04630 | ||
| In Vivo Model | Patient-derived advanced AML model | Homo sapiens | ||
| Experiment for Drug Resistance |
OncoPredict assay | |||
| Mechanism Description | Based on the findings, the high?CSRP1?groups of patients in the TCGA datasets showed higher sensitivity to 5-fluorouracil, gemcitabine, rapamycin, and cisplatin and lower sensitivity to fludarabine. CSRP1 may serve as a potential prognostic marker and a therapeutic target for AML in the future. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: CREB-binding protein (CREBBP) | [26], [27] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Dexamethasone | |||
| Molecule Alteration | Mutation | . |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Experiment for Molecule Alteration |
Next-generation sequencing assay; Exome sequencing assay; Transcriptome sequencing assay; Whole genome sequencing assay; Sanger Sequencing assay | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | Several of these alterations are known to induce a more stem cell-like state (eg, IkZF1) or confer resistance directly to specific chemotherapy agents such as CREBBP and glucocorticoids and mutations in the 5-nucleotidase gene NT5C2 and nucleoside a.logs. Many relapse-acquired lesions are enriched in specific pathways, including B-cell development (IkZF1), tumor suppression (TP53),34 Ras signaling, chromatin modification (CREBBP, SETD2),17 and drug metabolism (NT5C2). | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Cysteine and glycine-rich protein 1 (CSRP1) | [14] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Fludarabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Cell Pathway Regulation | Rap1 signaling pathway | Activation | hsa04015 | |
| HIF-1 signaling pathway | Activation | hsa04066 | ||
| JAK-STAT signaling pathway | Activation | hsa04630 | ||
| In Vivo Model | Patient-derived advanced AML model | Homo sapiens | ||
| Experiment for Drug Resistance |
OncoPredict assay | |||
| Mechanism Description | Based on the findings, the high?CSRP1?groups of patients in the TCGA datasets showed higher sensitivity to 5-fluorouracil, gemcitabine, rapamycin, and cisplatin and lower sensitivity to fludarabine. CSRP1 may serve as a potential prognostic marker and a therapeutic target for AML in the future. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Cysteine and glycine-rich protein 1 (CSRP1) | [14] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Fluorouracil | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Cell Pathway Regulation | Rap1 signaling pathway | Activation | hsa04015 | |
| HIF-1 signaling pathway | Activation | hsa04066 | ||
| JAK-STAT signaling pathway | Activation | hsa04630 | ||
| In Vivo Model | Patient-derived advanced AML model | Homo sapiens | ||
| Experiment for Drug Resistance |
OncoPredict assay | |||
| Mechanism Description | Based on the findings, the high?CSRP1?groups of patients in the TCGA datasets showed higher sensitivity to 5-fluorouracil, gemcitabine, rapamycin, and cisplatin and lower sensitivity to fludarabine. CSRP1 may serve as a potential prognostic marker and a therapeutic target for AML in the future. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Cysteine and glycine-rich protein 1 (CSRP1) | [14] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Gemcitabine | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Cell Pathway Regulation | Rap1 signaling pathway | Activation | hsa04015 | |
| HIF-1 signaling pathway | Activation | hsa04066 | ||
| JAK-STAT signaling pathway | Activation | hsa04630 | ||
| In Vivo Model | Patient-derived advanced AML model | Homo sapiens | ||
| Experiment for Drug Resistance |
OncoPredict assay | |||
| Mechanism Description | Based on the findings, the high?CSRP1?groups of patients in the TCGA datasets showed higher sensitivity to 5-fluorouracil, gemcitabine, rapamycin, and cisplatin and lower sensitivity to fludarabine. CSRP1 may serve as a potential prognostic marker and a therapeutic target for AML in the future. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Myeloid cell surface antigen CD33 (CD33) | [35] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Gemtuzumab ozogamicin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| Cell proliferation | Activation | hsa05200 | ||
| PI3K/AKT signaling pathway | Activation | hsa04151 | ||
| In Vitro Model | U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 |
| KG-1 cells | Bone marrow | Homo sapiens (Human) | CVCL_0374 | |
| GDM-1 cells | Blood | Homo sapiens (Human) | CVCL_1230 | |
| HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 | |
| NB4 cells | Bone marrow | Homo sapiens (Human) | CVCL_0005 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
Western Blot Analysis | |||
| Experiment for Drug Resistance |
Flow cytometric SCNP assays | |||
| Mechanism Description | AKT signaling modulates GO/calicheamicin-gamma1 cytotoxicity and is associated with cellular-resistance to these drugs. In turn, inhibition of AKT activation can greatly increase GO/calicheamicin-gamma1 sensitivity. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Beclin-1 (BECN1) | [36] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Gilteritinib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell autophagy | Inhibition | hsa04140 | |
| In Vitro Model | MV4-11/Gilteritinib cells | myeloid | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In gilteritinib-resistant AML cells, autophagy-related markers, mRFP-GFP-LC3 signals and autophagosome numbers were significantly enhanced. Autophagy inhibitor 3-MA could suppress gilteritinib resistance in AML cells. RNF38 knockdown inhibited gilteritinib resistance and autophagy in AML cells. Mechanistically, RNF38 reduced LMX1A expression by inducing its ubiquitination. RNF38 overexpression reversed the inhibitory effect of LMX1A on gilteritinib resistance and autophagy in AML cells, as well as AML tumor growth in vivo, while these effects could be abolished by proteasome inhibitor MG132. | |||
| Key Molecule: Beclin-1 (BECN1) | [36] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Gilteritinib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell autophagy | Inhibition | hsa04140 | |
| In Vitro Model | MOLM-13/Gilteritinib cells | myeloid | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In gilteritinib-resistant AML cells, autophagy-related markers, mRFP-GFP-LC3 signals and autophagosome numbers were significantly enhanced. Autophagy inhibitor 3-MA could suppress gilteritinib resistance in AML cells. RNF38 knockdown inhibited gilteritinib resistance and autophagy in AML cells. Mechanistically, RNF38 reduced LMX1A expression by inducing its ubiquitination. RNF38 overexpression reversed the inhibitory effect of LMX1A on gilteritinib resistance and autophagy in AML cells, as well as AML tumor growth in vivo, while these effects could be abolished by proteasome inhibitor MG134. | |||
| Key Molecule: Microtubule-associated protein 1 light chain 3-II/I (LC3-II/LC3-I) | [36] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Gilteritinib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell autophagy | Inhibition | hsa04140 | |
| In Vitro Model | MV4-11/Gilteritinib cells | myeloid | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In gilteritinib-resistant AML cells, autophagy-related markers, mRFP-GFP-LC3 signals and autophagosome numbers were significantly enhanced. Autophagy inhibitor 3-MA could suppress gilteritinib resistance in AML cells. RNF38 knockdown inhibited gilteritinib resistance and autophagy in AML cells. Mechanistically, RNF38 reduced LMX1A expression by inducing its ubiquitination. RNF38 overexpression reversed the inhibitory effect of LMX1A on gilteritinib resistance and autophagy in AML cells, as well as AML tumor growth in vivo, while these effects could be abolished by proteasome inhibitor MG133. | |||
| Key Molecule: Microtubule-associated protein 1 light chain 3-II/I (LC3-II/LC3-I) | [36] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Gilteritinib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell autophagy | Inhibition | hsa04140 | |
| In Vitro Model | MOLM-13/Gilteritinib cells | myeloid | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In gilteritinib-resistant AML cells, autophagy-related markers, mRFP-GFP-LC3 signals and autophagosome numbers were significantly enhanced. Autophagy inhibitor 3-MA could suppress gilteritinib resistance in AML cells. RNF38 knockdown inhibited gilteritinib resistance and autophagy in AML cells. Mechanistically, RNF38 reduced LMX1A expression by inducing its ubiquitination. RNF38 overexpression reversed the inhibitory effect of LMX1A on gilteritinib resistance and autophagy in AML cells, as well as AML tumor growth in vivo, while these effects could be abolished by proteasome inhibitor MG135. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [37] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Gilteritinib | |||
| Molecule Alteration | Missense mutation | p.D816V (c.2447A>T) |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| MOLM14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 | |
| In Vivo Model | Female NCr-nude mouse model | Mus musculus | ||
| Experiment for Drug Resistance |
CellTiter-Glo assay; IC50 assay | |||
| Key Molecule: E3 ubiquitin-protein ligase RNF38 (RNF38) | [36] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Gilteritinib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell autophagy | Inhibition | hsa04140 | |
| In Vitro Model | MV4-11/Gilteritinib si-RNF38 cells | myeloid | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay; qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In gilteritinib-resistant AML cells, autophagy-related markers, mRFP-GFP-LC3 signals and autophagosome numbers were significantly enhanced. Autophagy inhibitor 3-MA could suppress gilteritinib resistance in AML cells. RNF38 knockdown inhibited gilteritinib resistance and autophagy in AML cells. Mechanistically, RNF38 reduced LMX1A expression by inducing its ubiquitination. RNF38 overexpression reversed the inhibitory effect of LMX1A on gilteritinib resistance and autophagy in AML cells, as well as AML tumor growth in vivo, while these effects could be abolished by proteasome inhibitor MG136. | |||
| Key Molecule: E3 ubiquitin-protein ligase RNF38 (RNF38) | [36] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Gilteritinib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell autophagy | Inhibition | hsa04140 | |
| In Vitro Model | MOLM-13/Gilteritinib si-RNF38 cells | myeloid | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay; qRT-PCR | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | In gilteritinib-resistant AML cells, autophagy-related markers, mRFP-GFP-LC3 signals and autophagosome numbers were significantly enhanced. Autophagy inhibitor 3-MA could suppress gilteritinib resistance in AML cells. RNF38 knockdown inhibited gilteritinib resistance and autophagy in AML cells. Mechanistically, RNF38 reduced LMX1A expression by inducing its ubiquitination. RNF38 overexpression reversed the inhibitory effect of LMX1A on gilteritinib resistance and autophagy in AML cells, as well as AML tumor growth in vivo, while these effects could be abolished by proteasome inhibitor MG137. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Cyclin-dependent kinase inhibitor 1A (CDKN1A) | [19] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Idarubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | DNA Damage Response Mechanism | Regulation | N.A. | |
| In Vitro Model | MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 |
| MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
RT-qPCR; Western blot assay | |||
| Experiment for Drug Resistance |
MTT assay; Trypan blue assay; Clonogenicity assay; IC50 assay; Flow cytometry assay | |||
| Mechanism Description | DNA Damage Response Mechanism (DDR) comprises numerous molecules and pathways intended to arrest the cell cycle until DNA damage is repaired or else drive the cell to apoptosis.DDR regulators demonstrate increased expression in patients with high cytogenetic risk possibly reflecting increased genotoxic stress.Using PCR arrays we observed an upregulation of of several DDR genes (CDKN1A, GADD45A, GADD45G, EXO1, and PPP1R15A) in KASUMI-1 and MV4-11 cell lines that survived following treatment with Idarubicin and Cytarabine. | |||
| Key Molecule: Acetyl-CoA acetyltransferase 2 (ACAT2) | [19] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Idarubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | DNA Damage Response Mechanism | Regulation | N.A. | |
| In Vitro Model | MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 |
| MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
RT-qPCR; Western blot assay | |||
| Experiment for Drug Resistance |
MTT assay; Trypan blue assay; Clonogenicity assay; IC50 assay; Flow cytometry assay | |||
| Mechanism Description | DNA Damage Response Mechanism (DDR) comprises numerous molecules and pathways intended to arrest the cell cycle until DNA damage is repaired or else drive the cell to apoptosis.DDR regulators demonstrate increased expression in patients with high cytogenetic risk possibly reflecting increased genotoxic stress. Especially, PPP1R15A is mainly involved in the recovery of the cells from stress and it was the only DDR gene upregulated in AML patients. | |||
| Key Molecule: Growth arrest and DNA damage-inducible protein GADD45 gamma (GADD45G) | [19] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Idarubicin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | DNA Damage Response Mechanism | Regulation | N.A. | |
| In Vitro Model | MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 |
| MOLM-13 cells | Peripheral blood | Homo sapiens (Human) | CVCL_2119 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| TF-1 cells | Blood | Homo sapiens (Human) | CVCL_0559 | |
| Experiment for Molecule Alteration |
RT-qPCR; Western blot assay | |||
| Experiment for Drug Resistance |
MTT assay; Trypan blue assay; Clonogenicity assay; IC50 assay; Flow cytometry assay | |||
| Mechanism Description | DNA Damage Response Mechanism (DDR) comprises numerous molecules and pathways intended to arrest the cell cycle until DNA damage is repaired or else drive the cell to apoptosis.DDR regulators demonstrate increased expression in patients with high cytogenetic risk possibly reflecting increased genotoxic stress.Using PCR arrays we observed an upregulation of of several DDR genes (CDKN1A, GADD45A, GADD45G, EXO1, and PPP1R15A) in KASUMI-1 and MV4-11 cell lines that survived following treatment with Idarubicin and Cytarabine. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | |||||||||||||
|
|
|||||||||||||
| Key Molecule: DNA (cytosine-5)-methyltransferase 3A (DNMT3A) | [38] | ||||||||||||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Sensitive Drug | Idarubicin | ||||||||||||
| Molecule Alteration | Missense mutation | p.R882H (c.2645G>A) |
|||||||||||
| Wild Type Structure | Method: X-ray diffraction | Resolution: 2.40 Ã… | |||||||||||
| Mutant Type Structure | Method: X-ray diffraction | Resolution: 2.44 Ã… | |||||||||||
| Download The Information of Sequence | Download The Structure File | ||||||||||||
-
A
A
E
E
630
|
K
K
R
R
K
K
P
P
I
I
R
R
V
V
L
L
S
S
L
L
640
|
F
F
D
D
G
G
I
I
A
A
T
T
G
G
L
L
L
L
V
V
650
|
L
L
K
K
D
D
L
L
G
G
I
I
Q
Q
V
V
D
D
R
R
660
|
Y
Y
I
I
A
A
S
S
E
E
V
V
C
C
E
E
D
D
S
S
670
|
I
I
T
T
V
V
G
G
M
M
V
V
R
R
H
H
Q
Q
G
G
680
|
K
K
I
I
M
M
Y
Y
V
V
G
G
D
D
V
V
R
R
S
S
690
|
V
V
T
T
Q
Q
K
K
H
H
I
I
Q
Q
E
E
W
W
G
G
700
|
P
P
F
F
D
D
L
L
V
V
I
I
G
G
G
G
S
S
P
P
710
|
C
C
N
N
D
D
L
L
S
S
I
I
V
V
N
N
P
P
A
A
720
|
R
R
K
K
G
G
L
L
Y
Y
E
E
G
G
T
T
G
G
R
R
730
|
L
L
F
F
F
F
E
E
F
F
Y
Y
R
R
L
L
L
L
H
H
740
|
D
D
A
A
R
R
P
P
K
K
E
E
G
G
D
D
D
D
R
R
750
|
P
P
F
F
F
F
W
W
L
L
F
F
E
E
N
N
V
V
V
V
760
|
A
A
M
M
G
G
V
V
S
S
D
D
K
K
R
R
D
D
I
I
770
|
S
S
R
R
F
F
L
L
E
E
S
S
N
N
P
P
V
V
M
M
780
|
I
I
D
D
A
A
K
K
E
E
V
V
S
S
A
A
A
A
H
H
790
|
R
R
A
A
R
R
Y
Y
F
F
W
W
G
G
N
N
L
L
P
P
800
|
G
G
M
M
N
N
R
R
P
P
L
L
A
A
S
S
T
T
V
V
810
|
N
N
D
D
K
K
L
L
E
E
L
L
Q
Q
E
E
C
C
L
L
820
|
E
E
H
H
G
G
R
R
I
I
A
A
K
K
F
F
S
S
K
K
830
|
V
V
R
R
T
T
I
I
T
T
T
T
R
R
S
S
N
N
S
S
840
|
I
I
K
K
Q
Q
G
G
K
K
D
D
Q
Q
H
H
F
F
P
P
850
|
V
V
F
F
M
M
N
N
E
E
K
K
E
E
D
D
I
I
L
L
860
|
W
W
C
C
T
T
E
E
M
M
E
E
R
R
V
V
F
F
G
G
870
|
F
F
P
P
V
V
H
H
Y
Y
T
T
D
D
V
V
S
S
N
N
880
|
M
M
S
S
R
H
L
L
A
A
R
R
Q
Q
R
R
L
L
L
L
890
|
G
G
R
R
S
S
W
W
S
S
V
V
P
P
V
V
I
I
R
R
900
|
H
H
L
L
F
F
A
A
P
P
L
L
K
K
E
E
Y
Y
F
F
910
|
A
A
C
C
V
V
|
|||||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| In Vitro Model | Bone marrow | N.A. | |||||||||||
| In Vivo Model | NOD/SCID mouse xenograft model | Mus musculus | |||||||||||
| Mechanism Description | The missense mutation p.R882H (c.2645G>A) in gene DNMT3A cause the sensitivity of Idarubicin by unusual activation of pro-survival pathway | ||||||||||||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | |||||||||||||
|
|
|||||||||||||
| Key Molecule: Oxalosuccinate decarboxylase (IDH1) | [39] | ||||||||||||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Sensitive Drug | Ivosidenib | ||||||||||||
| Molecule Alteration | Missense mutation | p.R132H (c.395G>A) |
|||||||||||
| Wild Type Structure | Method: X-ray diffraction | Resolution: 1.65 Ã… | |||||||||||
| Mutant Type Structure | Method: X-ray diffraction | Resolution: 1.88 Ã… | |||||||||||
| Download The Information of Sequence | Download The Structure File | ||||||||||||
-
M
M
S
S
K
K
K
K
I
I
S
S
G
G
G
G
S
S
10
|
V
V
V
V
E
E
M
M
Q
Q
G
G
D
D
E
E
M
M
T
T
20
|
R
R
I
I
I
I
W
W
E
E
L
L
I
I
K
K
E
E
K
K
30
|
L
L
I
I
F
F
P
P
Y
Y
V
V
E
E
L
L
D
D
L
L
40
|
H
H
S
S
Y
Y
D
D
L
L
G
G
I
I
E
E
N
N
R
R
50
|
D
D
A
A
T
T
N
N
D
D
Q
Q
V
V
T
T
K
K
D
D
60
|
A
A
A
A
E
E
A
A
I
I
K
K
K
K
H
H
N
N
V
V
70
|
G
G
V
V
K
K
C
C
A
A
T
T
I
I
T
T
P
P
D
D
80
|
E
E
K
K
R
R
V
V
E
E
E
E
F
F
K
K
L
L
K
K
90
|
Q
Q
M
M
W
W
K
K
S
S
P
P
N
N
G
G
T
T
I
I
100
|
R
R
N
N
I
I
L
L
G
G
G
G
T
T
V
V
F
F
R
R
110
|
E
E
A
A
I
I
I
I
C
C
K
K
N
N
I
I
P
P
R
R
120
|
L
L
V
V
S
S
G
G
W
W
V
V
K
K
P
P
I
I
I
I
130
|
I
I
G
G
R
H
H
H
A
A
Y
Y
G
G
D
D
Q
Q
Y
Y
140
|
R
R
A
A
T
T
D
D
F
F
V
V
V
V
P
P
G
G
P
P
150
|
G
G
K
K
V
V
E
E
I
I
T
T
Y
Y
T
T
P
P
S
S
160
|
D
D
G
G
T
T
Q
Q
K
K
V
V
T
T
Y
Y
L
L
V
V
170
|
H
H
N
N
F
F
E
E
E
E
G
G
G
G
G
G
V
V
A
A
180
|
M
M
G
G
M
M
Y
Y
N
N
Q
Q
D
D
K
K
S
S
I
I
190
|
E
E
D
D
F
F
A
A
H
H
S
S
S
S
F
F
Q
Q
M
M
200
|
A
A
L
L
S
S
K
K
G
G
W
W
P
P
L
L
Y
Y
L
L
210
|
S
S
T
T
K
K
N
N
T
T
I
I
L
L
K
K
K
K
Y
Y
220
|
D
D
G
G
R
R
F
F
K
K
D
D
I
I
F
F
Q
Q
E
E
230
|
I
I
Y
Y
D
D
K
K
Q
Q
Y
Y
K
K
S
S
Q
Q
F
F
240
|
E
E
A
A
Q
Q
K
K
I
I
W
W
Y
Y
E
E
H
H
R
R
250
|
L
L
I
I
D
D
D
D
M
M
V
V
A
A
Q
Q
A
A
M
M
260
|
K
K
S
S
E
E
G
G
G
G
F
F
I
I
W
W
A
A
C
C
270
|
K
K
N
N
Y
Y
D
D
G
G
D
D
V
V
Q
Q
S
S
D
D
280
|
S
S
V
V
A
A
Q
Q
G
G
Y
Y
G
G
S
S
L
L
G
G
290
|
M
M
M
M
T
T
S
S
V
V
L
L
V
V
C
C
P
P
D
D
300
|
G
G
K
K
T
T
V
V
E
E
A
A
E
E
A
A
A
A
H
H
310
|
G
G
T
T
V
V
T
T
R
R
H
H
Y
Y
R
R
M
M
Y
Y
320
|
Q
Q
K
K
G
G
Q
Q
E
E
T
T
S
S
T
T
N
N
P
P
330
|
I
I
A
A
S
S
I
I
F
F
A
A
W
W
T
T
R
R
G
G
340
|
L
L
A
A
H
H
R
R
A
A
K
K
L
L
D
D
N
N
N
N
350
|
K
K
E
E
L
L
A
A
F
F
F
F
A
A
N
N
A
A
L
L
360
|
E
E
E
E
V
V
S
S
I
I
E
E
T
T
I
I
E
E
A
A
370
|
G
G
F
F
M
M
T
T
K
K
D
D
L
L
A
A
A
A
C
C
380
|
I
I
K
K
G
G
L
L
P
P
N
N
V
V
Q
Q
R
R
S
S
390
|
D
D
Y
Y
L
L
N
N
T
T
F
F
E
E
F
F
M
M
D
D
400
|
K
K
L
L
G
G
E
E
N
N
L
L
K
K
I
I
K
K
L
L
410
|
A
A
Q
Q
A
A
K
K
L
L
S
S
L
L
E
E
H
H
H
H
420
|
H
H
H
H
H
H
H
H
H
H
H
H
|
|||||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Key Molecule: Oxalosuccinate decarboxylase (IDH1) | [39] | ||||||||||||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Sensitive Drug | Ivosidenib | ||||||||||||
| Molecule Alteration | Missense mutation | p.R132C (c.394C>T) |
|||||||||||
| Wild Type Structure | Method: X-ray diffraction | Resolution: 1.93 Ã… | |||||||||||
| Mutant Type Structure | Method: X-ray diffraction | Resolution: 2.20 Ã… | |||||||||||
| Download The Information of Sequence | Download The Structure File | ||||||||||||
-
-
M
-
S
-
K
-
K
-
I
-
S
-
G
-
G
-
S
10
|
-
V
-
V
-
E
-
M
-
Q
-
G
-
D
-
E
-
M
-
T
20
|
-
R
-
I
-
I
-
W
-
E
-
L
-
I
-
K
-
E
-
K
30
|
-
L
-
I
-
F
-
P
-
Y
-
V
-
E
-
L
-
D
-
L
40
|
-
H
-
S
-
Y
-
D
-
L
-
G
-
I
-
E
-
N
-
R
50
|
-
D
-
A
-
T
-
N
-
D
-
Q
-
V
-
T
-
K
-
D
60
|
-
A
-
A
-
E
-
A
-
I
-
K
-
K
-
H
-
N
-
V
70
|
-
G
-
V
-
K
-
C
-
A
-
T
-
I
-
T
-
P
-
D
80
|
-
E
-
K
-
R
-
V
-
E
-
E
-
F
-
K
-
L
-
K
90
|
-
Q
-
M
-
W
-
K
-
S
-
P
-
N
-
G
-
T
-
I
100
|
-
R
-
N
-
I
-
L
-
G
-
G
-
T
-
V
-
F
-
R
110
|
-
E
-
A
-
I
-
I
-
C
-
K
-
N
-
I
-
P
-
R
120
|
-
L
-
V
-
S
-
G
-
W
-
V
K
K
P
P
I
I
I
I
130
|
I
I
G
G
S
C
H
H
A
A
Y
Y
G
G
D
D
-
Q
-
Y
140
|
-
R
-
A
-
T
-
D
-
F
-
V
-
V
-
P
-
G
-
P
150
|
-
G
-
K
-
V
-
E
-
I
-
T
-
Y
-
T
-
P
-
S
160
|
-
D
-
G
-
T
-
Q
-
K
-
V
-
T
-
Y
-
L
-
V
170
|
-
H
-
N
-
F
-
E
-
E
-
G
-
G
-
G
-
V
-
A
180
|
-
M
-
G
-
M
-
Y
-
N
-
Q
-
D
-
K
-
S
-
I
190
|
-
E
-
D
-
F
-
A
-
H
-
S
-
S
-
F
-
Q
-
M
200
|
-
A
-
L
-
S
-
K
-
G
-
W
-
P
-
L
-
Y
-
L
210
|
-
S
-
T
-
K
-
N
-
T
-
I
-
L
-
K
-
K
-
Y
220
|
-
D
-
G
-
R
-
F
-
K
-
D
-
I
-
F
-
Q
-
E
230
|
-
I
-
Y
-
D
-
K
-
Q
-
Y
-
K
-
S
-
Q
-
F
240
|
-
E
-
A
-
Q
-
K
-
I
-
W
-
Y
-
E
-
H
-
R
250
|
-
L
-
I
-
D
-
D
-
M
-
V
-
A
-
Q
-
A
-
M
260
|
-
K
-
S
-
E
-
G
-
G
-
F
-
I
-
W
-
A
-
C
270
|
-
K
-
N
-
Y
-
D
-
G
-
D
-
V
-
Q
-
S
-
D
280
|
-
S
-
V
-
A
-
Q
-
G
-
Y
-
G
-
S
-
L
-
G
290
|
-
M
-
M
-
T
-
S
-
V
-
L
-
V
-
C
-
P
-
D
300
|
-
G
-
K
-
T
-
V
-
E
-
A
-
E
-
A
-
A
-
H
310
|
-
G
-
T
-
V
-
T
-
R
-
H
-
Y
-
R
-
M
-
Y
320
|
-
Q
-
K
-
G
-
Q
-
E
-
T
-
S
-
T
-
N
-
P
330
|
-
I
-
A
-
S
-
I
-
F
-
A
-
W
-
T
-
R
-
G
340
|
-
L
-
A
-
H
-
R
-
A
-
K
-
L
-
D
-
N
-
N
350
|
-
K
-
E
-
L
-
A
-
F
-
F
-
A
-
N
-
A
-
L
360
|
-
E
-
E
-
V
-
S
-
I
-
E
-
T
-
I
-
E
-
A
370
|
-
G
-
F
-
M
-
T
-
K
-
D
-
L
-
A
-
A
-
C
380
|
-
I
-
K
-
G
-
L
-
P
-
N
-
V
-
Q
-
R
-
S
390
|
-
D
-
Y
-
L
-
N
-
T
-
F
-
E
-
F
-
M
-
D
400
|
-
K
-
L
-
G
-
E
-
N
-
L
-
K
-
I
-
K
-
L
410
|
-
A
-
Q
-
A
-
K
-
L
|
|||||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Key Molecule: Oxalosuccinate decarboxylase (IDH1) | [39] | ||||||||||||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Sensitive Drug | Ivosidenib | ||||||||||||
| Molecule Alteration | Missense mutation | p.R132S (c.394C>A) |
|||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Key Molecule: Oxalosuccinate decarboxylase (IDH1) | [39] | ||||||||||||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Sensitive Drug | Ivosidenib | ||||||||||||
| Molecule Alteration | Missense mutation | p.R132G (c.394C>G) |
|||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Key Molecule: Oxalosuccinate decarboxylase (IDH1) | [39] | ||||||||||||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Sensitive Drug | Ivosidenib | ||||||||||||
| Molecule Alteration | Missense mutation | p.R132L (c.395G>T) |
|||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [40] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Lestaurtinib | |||
| Molecule Alteration | Missense mutation | p.D835E |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Bone marrow | Blood | Homo sapiens (Human) | N.A. |
| In Vivo Model | A retrospective survey in conducting clinical studies | Homo sapiens | ||
| Experiment for Molecule Alteration |
Whole-exome sequencing assay | |||
| Mechanism Description | Among the mutational patterns underlying relapse, the authors detected the acquisition of proliferative advantage by signaling activation (PTPN11 and FLT3-TkD mutations) and the increased resistance to apoptosis (hyperactivation of TYk2). Moreover, FLT3/TkD and ITD being subclonal mutations is one of the plausible explanations of unsatisfying results of FLT3 inhibitors, along with many others concerning inadequate in vivo inhibition of the target, development of secondary pharmacokinetic or pharmacodynamic resistance, and influence of FLT3-mutant allelic burden. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [40] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Lestaurtinib | |||
| Molecule Alteration | Chromosome variation | FLT3/ITD (Internal tandem duplication ) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Bone marrow | Blood | Homo sapiens (Human) | N.A. |
| In Vivo Model | A retrospective survey in conducting clinical studies | Homo sapiens | ||
| Experiment for Molecule Alteration |
Whole-exome sequencing assay | |||
| Mechanism Description | Among the mutational patterns underlying relapse, the authors detected the acquisition of proliferative advantage by signaling activation (PTPN11 and FLT3-TkD mutations) and the increased resistance to apoptosis (hyperactivation of TYk2). Moreover, FLT3/TkD and ITD being subclonal mutations is one of the plausible explanations of unsatisfying results of FLT3 inhibitors, along with many others concerning inadequate in vivo inhibition of the target, development of secondary pharmacokinetic or pharmacodynamic resistance, and influence of FLT3-mutant allelic burden. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | |||||||||||||
|
|
|||||||||||||
| Key Molecule: Cytosolic purine 5'-nucleotidase (NT5C2) | [27], [41] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Mercaptopurine | ||||||||||||
| Molecule Alteration | Missense mutation | p.R238W (c.c712t) |
|||||||||||
| Wild Type Structure | Method: X-ray diffraction | Resolution: 1.70 Ã… | |||||||||||
| Mutant Type Structure | Method: X-ray diffraction | Resolution: 1.84 Ã… | |||||||||||
| Download The Information of Sequence | Download The Structure File | ||||||||||||
-
-
M
-
G
-
S
-
S
-
H
-
H
-
H
-
H
-10
|
-
H
-
H
-
S
-
S
-
G
-
L
-
V
-
P
-
R
-
G
0
|
-
S
-
M
-
S
T
T
S
S
W
W
S
S
D
D
R
R
L
L
10
|
Q
Q
N
N
A
A
A
A
D
D
M
M
P
P
A
A
N
N
M
M
20
|
D
D
K
K
H
H
A
A
L
L
K
K
K
K
Y
Y
R
R
R
R
30
|
E
E
A
A
Y
Y
H
H
R
R
V
V
F
F
V
V
N
N
R
R
40
|
S
S
L
L
A
A
M
M
E
E
K
K
I
I
K
K
C
C
F
F
50
|
G
G
F
F
D
D
M
M
D
D
Y
Y
T
T
L
L
A
A
V
V
60
|
Y
Y
K
K
S
S
P
P
E
E
Y
Y
E
E
S
S
L
L
G
G
70
|
F
F
E
E
L
L
T
T
V
V
E
E
R
R
L
L
V
V
S
S
80
|
I
I
G
G
Y
Y
P
P
Q
Q
E
E
L
L
L
L
S
S
F
F
90
|
A
A
Y
Y
D
D
S
S
T
T
F
F
P
P
T
T
R
R
G
G
100
|
L
L
V
V
F
F
D
D
T
T
L
L
Y
Y
G
G
N
N
L
L
110
|
L
L
K
K
V
V
D
D
A
A
Y
Y
G
G
N
N
L
L
L
L
120
|
V
V
C
C
A
A
H
H
G
G
F
F
N
N
F
F
I
I
R
R
130
|
G
G
P
P
E
E
T
T
R
R
E
E
Q
Q
Y
Y
P
P
N
N
140
|
K
K
F
F
I
I
Q
Q
R
R
D
D
D
D
T
T
E
E
R
R
150
|
F
F
Y
Y
I
I
L
L
N
N
T
T
L
L
F
F
N
N
L
L
160
|
P
P
E
E
T
T
Y
Y
L
L
L
L
A
A
C
C
L
L
V
V
170
|
D
D
F
F
F
F
T
T
N
N
C
C
P
P
R
R
Y
Y
T
T
180
|
S
S
C
C
E
E
T
T
G
G
F
F
K
K
D
D
G
G
D
D
190
|
L
L
F
F
M
M
S
S
Y
Y
R
R
S
S
M
M
F
F
Q
Q
200
|
D
D
V
V
R
R
D
D
A
A
V
V
D
D
W
W
V
V
H
H
210
|
Y
Y
K
K
G
G
S
S
L
L
K
K
E
E
K
K
T
T
V
V
220
|
E
E
N
N
L
L
E
E
K
K
Y
Y
V
V
V
V
K
K
D
D
230
|
G
G
K
K
L
L
P
P
L
L
L
L
L
L
S
S
R
W
M
M
240
|
K
K
E
E
V
V
G
G
K
K
V
V
F
F
L
L
A
A
T
T
250
|
N
N
S
S
D
D
Y
Y
K
K
Y
Y
T
T
D
D
K
K
I
I
260
|
M
M
T
T
Y
Y
L
L
F
F
D
D
F
F
P
P
H
H
G
G
270
|
P
P
K
K
P
P
G
G
S
S
S
S
H
H
R
R
P
P
W
W
280
|
Q
Q
S
S
Y
Y
F
F
D
D
L
L
I
I
L
L
V
V
D
D
290
|
A
A
R
R
K
K
P
P
L
L
F
F
F
F
G
G
E
E
G
G
300
|
T
T
V
V
L
L
R
R
Q
Q
V
V
D
D
T
T
K
K
T
T
310
|
G
G
K
K
L
L
K
K
I
I
G
G
T
T
Y
Y
T
T
G
G
320
|
P
P
L
L
Q
Q
H
H
G
G
I
I
V
V
Y
Y
S
S
G
G
330
|
G
G
S
S
S
S
D
D
T
T
I
I
C
C
D
D
L
L
L
L
340
|
G
G
A
A
K
K
G
G
K
K
D
D
I
I
L
L
Y
Y
I
I
350
|
G
G
D
D
H
H
I
I
F
F
G
G
D
D
I
I
L
L
K
K
360
|
S
S
K
K
K
K
R
R
Q
Q
G
G
W
W
R
R
T
T
F
F
370
|
L
L
V
V
I
I
P
P
E
E
L
L
A
A
Q
Q
E
E
L
L
380
|
H
H
V
V
W
W
T
T
D
D
K
K
S
S
S
S
L
L
F
F
390
|
E
E
E
E
L
L
Q
Q
S
S
L
L
D
D
I
I
F
F
L
L
400
|
A
A
E
E
L
L
Y
Y
K
K
H
H
L
L
D
D
S
S
S
S
410
|
S
S
N
N
E
E
R
R
P
P
D
D
I
I
S
S
S
S
I
I
420
|
Q
Q
R
R
R
R
I
I
K
K
K
K
V
V
T
T
H
H
D
D
430
|
M
M
D
D
M
M
C
C
Y
Y
G
G
M
M
M
M
G
G
S
S
440
|
L
L
F
F
R
R
S
S
G
G
S
S
R
R
Q
Q
T
T
L
L
450
|
F
F
A
A
S
S
Q
Q
V
V
M
M
R
R
Y
Y
A
A
D
D
460
|
L
L
Y
Y
A
A
A
A
S
S
F
F
I
I
N
N
L
L
L
L
470
|
Y
Y
Y
Y
P
P
F
F
S
S
Y
Y
L
L
F
F
R
R
A
A
480
|
A
A
H
H
V
V
L
L
M
M
P
P
H
H
E
E
S
S
-
T
490
|
-
V
-
E
-
H
-
T
-
H
-
V
-
D
-
I
-
N
-
E
500
|
-
M
-
E
-
S
-
P
-
L
-
A
-
T
-
R
-
N
-
R
510
|
-
T
-
S
-
V
-
D
-
F
-
K
-
D
-
T
-
D
-
Y
520
|
-
K
-
R
-
H
-
Q
-
L
-
T
-
R
-
S
-
I
-
S
530
|
-
E
-
I
-
K
-
P
-
P
-
N
-
L
|
|||||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Experiment for Molecule Alteration |
Next-generation sequencing assay; Exome sequencing assay; Transcriptome sequencing assay; Whole genome sequencing assay; Sanger Sequencing assay | ||||||||||||
| Experiment for Drug Resistance |
Flow cytometry assay | ||||||||||||
| Mechanism Description | Several of these alterations are known to induce a more stem cell-like state (eg, IkZF1) or confer resistance directly to specific chemotherapy agents such as CREBBP and glucocorticoids and mutations in the 5-nucleotidase gene NT5C2 and nucleoside a.logs. Many relapse-acquired lesions are enriched in specific pathways, including B-cell development (IkZF1), tumor suppression (TP53),34 Ras signaling, chromatin modification (CREBBP, SETD2),17 and drug metabolism (NT5C2). | ||||||||||||
| Key Molecule: Cytosolic purine 5'-nucleotidase (NT5C2) | [27], [41] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Mercaptopurine | ||||||||||||
| Molecule Alteration | Missense mutation | p.S445F (c.c1334t) |
|||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Experiment for Molecule Alteration |
Next-generation sequencing assay; Exome sequencing assay; Transcriptome sequencing assay; Whole genome sequencing assay; Sanger Sequencing assay | ||||||||||||
| Experiment for Drug Resistance |
Flow cytometry assay | ||||||||||||
| Mechanism Description | Several of these alterations are known to induce a more stem cell-like state (eg, IkZF1) or confer resistance directly to specific chemotherapy agents such as CREBBP and glucocorticoids and mutations in the 5-nucleotidase gene NT5C2 and nucleoside a.logs. Many relapse-acquired lesions are enriched in specific pathways, including B-cell development (IkZF1), tumor suppression (TP53),34 Ras signaling, chromatin modification (CREBBP, SETD2),17 and drug metabolism (NT5C2). | ||||||||||||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Integrin beta-1 (ITGB1) | [11] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Metformin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | KG-1 A cells | Blood | Homo sapiens (Human) | CVCL_0374 |
| Experiment for Molecule Alteration |
qPCR; qRT-PCR | |||
| Experiment for Drug Resistance |
Cell viability and proliferation assay; Cell cycle assay; Flow cytometric assay | |||
| Mechanism Description | We found that idarubicin slightly upregulated myeloid differentiation markers, CD11b and CD14. Treatment with cytarabine, idarubicin, venetoclax, metformin, and S63845 upregulated some cell surface markers like HLA-DR expression, and metformin upregulated CD9, CD31, and CD105 cell surface marker expression. In conclusion, we believe that metformin has the potential to be used as an adjuvant in the treatment of resistant-to-first-line-chemotherapy AML cells.Also, we believe that the results of our study will stimulate further research and the potential use of changes in the expression of cell surface markers in the development of new therapeutic strategies. | |||
| Key Molecule: Platelet endothelial cell adhesion molecule (PECAM1) | [11] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Metformin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | KG-1 A cells | Blood | Homo sapiens (Human) | CVCL_0374 |
| Experiment for Molecule Alteration |
qPCR; qRT-PCR | |||
| Experiment for Drug Resistance |
Cell viability and proliferation assay; Cell cycle assay; Flow cytometric assay | |||
| Mechanism Description | We found that idarubicin slightly upregulated myeloid differentiation markers, CD11b and CD14. Treatment with cytarabine, idarubicin, venetoclax, metformin, and S63845 upregulated some cell surface markers like HLA-DR expression, and metformin upregulated CD9, CD31, and CD105 cell surface marker expression. In conclusion, we believe that metformin has the potential to be used as an adjuvant in the treatment of resistant-to-first-line-chemotherapy AML cells.Also, we believe that the results of our study will stimulate further research and the potential use of changes in the expression of cell surface markers in the development of new therapeutic strategies. | |||
| Key Molecule: Endoglin (ENG) | [11] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Metformin | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | KG-1 A cells | Blood | Homo sapiens (Human) | CVCL_0374 |
| Experiment for Molecule Alteration |
qPCR; qRT-PCR | |||
| Experiment for Drug Resistance |
Cell viability and proliferation assay; Cell cycle assay; Flow cytometric assay | |||
| Mechanism Description | We found that idarubicin slightly upregulated myeloid differentiation markers, CD11b and CD14. Treatment with cytarabine, idarubicin, venetoclax, metformin, and S63845 upregulated some cell surface markers like HLA-DR expression, and metformin upregulated CD9, CD31, and CD105 cell surface marker expression. In conclusion, we believe that metformin has the potential to be used as an adjuvant in the treatment of resistant-to-first-line-chemotherapy AML cells.Also, we believe that the results of our study will stimulate further research and the potential use of changes in the expression of cell surface markers in the development of new therapeutic strategies. | |||
| Key Molecule: CD9 antigen (CD9) | [11] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Metformin | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | KG-1 A cells | Blood | Homo sapiens (Human) | CVCL_0374 |
| Experiment for Molecule Alteration |
qPCR; qRT-PCR | |||
| Experiment for Drug Resistance |
Cell viability and proliferation assay; Cell cycle assay; Flow cytometric assay | |||
| Mechanism Description | We found that idarubicin slightly upregulated myeloid differentiation markers, CD11b and CD14. Treatment with cytarabine, idarubicin, venetoclax, metformin, and S63845 upregulated some cell surface markers like HLA-DR expression, and metformin upregulated CD9, CD31, and CD105 cell surface marker expression. In conclusion, we believe that metformin has the potential to be used as an adjuvant in the treatment of resistant-to-first-line-chemotherapy AML cells.Also, we believe that the results of our study will stimulate further research and the potential use of changes in the expression of cell surface markers in the development of new therapeutic strategies. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Ras-related C3 botulinum toxin substrate 1 (RAC1) | [42] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Midostaurin | |||
| Molecule Alteration | Function | Activation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | HEK293 cells | Kidney | Homo sapiens (Human) | CVCL_0045 |
| 786-O cells | Kidney | Homo sapiens (Human) | CVCL_1051 | |
| Experiment for Molecule Alteration |
RAC1 activation assay | |||
| Experiment for Drug Resistance |
CellTiter-Glo Luminescent Cell Viability Assay; Flow cytometric analysis | |||
| Mechanism Description | Midostaurin resistance can be overcome by a combination of midostaruin, the BCL-2 inhibitor venetoclax and the RAC1 inhibitor Eht1864 in midostaurin-resistant AML cell lines and primary samples, providing the first evidence of a potential new treatment approach to eradicate FLT3-ITD + AML. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [43] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Midostaurin | |||
| Molecule Alteration | Missense mutation | p.Y842C (c.2525A>G) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Bone marrow | N.A. | ||
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | The missense mutation p.Y842C (c.2525A>G) in gene FLT3 cause the sensitivity of Midostaurin by aberration of the drug's therapeutic target | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [44] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Midostaurin | |||
| Molecule Alteration | Missense mutation | p.D835Y (c.2503G>T) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Bone marrow | N.A. | ||
| Mechanism Description | The missense mutation p.D835Y (c.2503G>T) in gene FLT3 cause the sensitivity of Midostaurin by aberration of the drug's therapeutic target | |||
|
|
||||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [37] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Midostaurin | |||
| Molecule Alteration | Missense mutation | p.D816V (c.2447A>T) |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| MOLM14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 | |
| In Vivo Model | Female NCr-nude mouse model | Mus musculus | ||
| Experiment for Drug Resistance |
CellTiter-Glo assay; IC50 assay | |||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [45] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Midostaurin | |||
| Molecule Alteration | Missense mutation | p.N822K (c.2466T>G) |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | A375 cells | Skin | Homo sapiens (Human) | CVCL_0132 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| H1703 cells | Lung | Homo sapiens (Human) | CVCL_1490 | |
| HCT-116 cells | Colon | Homo sapiens (Human) | CVCL_0291 | |
| Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 | |
| HMC-1.2 cells | Blood | Homo sapiens (Human) | CVCL_H205 | |
| P815 cells | N.A. | Mus musculus (Mouse) | CVCL_2154 | |
| MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| HMC-1.1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_H206 | |
| EOL1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0258 | |
| CHO-K1 cells | Ovary | Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) | CVCL_0214 | |
| In Vivo Model | Female Hsd:Athymic Nude-Foxn1nu nude mouse xenograft model | Mus musculus | ||
| Experiment for Drug Resistance |
IC50 assay | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: hsa-mir-494 | [46] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Mitoxantrone | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| U937 cells | Blood | Homo sapiens (Human) | CVCL_0007 | |
| KG1a cells | Pleural effusion | Homo sapiens (Human) | CVCL_1824 | |
| In Vivo Model | Mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
RT-PCR | |||
| Experiment for Drug Resistance |
MTT assay; Flow cytometry assay | |||
| Mechanism Description | microRNA-494 activation suppresses bone marrow stromal cell-mediated drug resistance in acute myeloid leukemia cells. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.D835Y |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The pexidartinib IC50 values of cells with D835Y mutation was 206, the pexidartinib IC50 value of cells without mutation was 1. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.D835V |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The pexidartinib IC50 values of cells with D835V mutation was 320, the pexidartinib IC50 value of cells without mutation was 1. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.D835I |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The pexidartinib IC50 values of cells with D835I mutation was 1937, the pexidartinib IC50 value of cells without mutation was 1. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.D835F |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The pexidartinib IC50 values of cells with D835F mutation was 415, the pexidartinib IC50 value of cells without mutation was 1. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Frameshift mutation | p.D835Del |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The pexidartinib IC50 values of cells with D835Del mutation was 121, the pexidartinib IC50 value of cells without mutation was 1. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.F691L |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The multiple mutations that can confer resistance to quizartinib and pexidartinib. The gatekeeper mutation F691L was the most common mutation in all protocols involving quizartinib; it was rather frequent even with pexidartinib alone. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.F691L |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | MOLM-14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| Experiment for Drug Resistance |
MTS assay | |||
| Mechanism Description | The multiple mutations that can confer resistance to quizartinib and pexidartinib. The gatekeeper mutation F691L was the most common mutation in all protocols involving quizartinib; it was rather frequent even with pexidartinib alone. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation | p.F691L |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | U87-MG cells | Brain | Homo sapiens (Human) | CVCL_0022 |
| Ishikawa cells | Endometrium | Homo sapiens (Human) | CVCL_2529 | |
| Mechanism Description | The gatekeeper mutation F691L confers resistance to specific FLT3 inhibitors such as quizartinib, but pexidartinib is much less resistance to this mutation. Pexidartinib alone is however sensitive to many other resistance mutations. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [47] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Pexidartinib | |||
| Molecule Alteration | Missense mutation+Internal tandem duplication mutation | p.F691L+ FLT3-ITD |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | U87-MG cells | Brain | Homo sapiens (Human) | CVCL_0022 |
| Ishikawa cells | Endometrium | Homo sapiens (Human) | CVCL_2529 | |
| Mechanism Description | The gatekeeper mutation F691L confers resistance to specific FLT3 inhibitors such as quizartinib, but pexidartinib is much less resistance to this mutation. Pexidartinib alone is however sensitive to many other resistance mutations. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [45] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Regorafenib | |||
| Molecule Alteration | Missense mutation | p.N822K (c.2466T>G) |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | A375 cells | Skin | Homo sapiens (Human) | CVCL_0132 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| H1703 cells | Lung | Homo sapiens (Human) | CVCL_1490 | |
| HCT-116 cells | Colon | Homo sapiens (Human) | CVCL_0291 | |
| Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 | |
| HMC-1.2 cells | Blood | Homo sapiens (Human) | CVCL_H205 | |
| P815 cells | N.A. | Mus musculus (Mouse) | CVCL_2154 | |
| MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| HMC-1.1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_H206 | |
| EOL1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0258 | |
| CHO-K1 cells | Ovary | Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) | CVCL_0214 | |
| In Vivo Model | Female Hsd:Athymic Nude-Foxn1nu nude mouse xenograft model | Mus musculus | ||
| Experiment for Drug Resistance |
IC50 assay | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [45] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Ripretinib | |||
| Molecule Alteration | Missense mutation | p.N822K (c.2466T>G) |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | A375 cells | Skin | Homo sapiens (Human) | CVCL_0132 |
| THP-1 cells | Blood | Homo sapiens (Human) | CVCL_0006 | |
| Kasumi-1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0589 | |
| H1703 cells | Lung | Homo sapiens (Human) | CVCL_1490 | |
| HCT-116 cells | Colon | Homo sapiens (Human) | CVCL_0291 | |
| Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 | |
| HMC-1.2 cells | Blood | Homo sapiens (Human) | CVCL_H205 | |
| P815 cells | N.A. | Mus musculus (Mouse) | CVCL_2154 | |
| MV-4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| HMC-1.1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_H206 | |
| EOL1 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0258 | |
| CHO-K1 cells | Ovary | Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) | CVCL_0214 | |
| In Vivo Model | Female Hsd:Athymic Nude-Foxn1nu nude mouse xenograft model | Mus musculus | ||
| Experiment for Drug Resistance |
IC50 assay | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Tyrosine-protein kinase JAK2 (JAK3) | [48] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Ruxolitinib | |||
| Molecule Alteration | Missense mutation | p.V617F (c.1849G>T) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Bone marrow | N.A. | ||
| Mechanism Description | The missense mutation p.V617F (c.1849G>T) in gene JAK2 cause the sensitivity of Ruxolitinib by aberration of the drug's therapeutic target | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Cysteine and glycine-rich protein 1 (CSRP1) | [14] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Sirolimus | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Discovered Using In-vivo Testing Model | |||
| Cell Pathway Regulation | Rap1 signaling pathway | Activation | hsa04015 | |
| HIF-1 signaling pathway | Activation | hsa04066 | ||
| JAK-STAT signaling pathway | Activation | hsa04630 | ||
| In Vivo Model | Patient-derived advanced AML model | Homo sapiens | ||
| Experiment for Drug Resistance |
OncoPredict assay | |||
| Mechanism Description | Based on the findings, the high?CSRP1?groups of patients in the TCGA datasets showed higher sensitivity to 5-fluorouracil, gemcitabine, rapamycin, and cisplatin and lower sensitivity to fludarabine. CSRP1 may serve as a potential prognostic marker and a therapeutic target for AML in the future. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [49] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Missense mutation | p.F691 |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Experiment for Molecule Alteration |
FISH assay; Comparative genomic hybridization array assay; Single nucleotide polymorphism array assay; PCR; Next-generation sequencing assay; Sanger sequencing assay | |||
| Experiment for Drug Resistance |
Southern blot analysis; Spectral karyotyping assay | |||
| Mechanism Description | FLT3-mutated patients treated with AC220, sorafenib, or sunitinib commonly relapse with new, resistant FLT3 D835 or F691 mutations within the preexisting FLT3-ITD allele, and one third of the patients who discontinued therapy for any reason also have acquired such mutations. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [49] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Missense mutation | p.D835 |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Experiment for Molecule Alteration |
FISH assay; Comparative genomic hybridization array assay; Single nucleotide polymorphism array assay; PCR; Next-generation sequencing assay; Sanger sequencing assay | |||
| Experiment for Drug Resistance |
Southern blot analysis; Spectral karyotyping assay | |||
| Mechanism Description | FLT3-mutated patients treated with AC220, sorafenib, or sunitinib commonly relapse with new, resistant FLT3 D835 or F691 mutations within the preexisting FLT3-ITD allele, and one third of the patients who discontinued therapy for any reason also have acquired such mutations. | |||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [50] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Missense mutation | p.D835Y |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vivo Model | A retrospective survey in conducting clinical studies | Homo sapiens | ||
| Experiment for Molecule Alteration |
DNA sequencing assay | |||
| Experiment for Drug Resistance |
Aldefluor activity analysis | |||
| Mechanism Description | Both ITD and tyrosine kinase domain mutations at D835 were identified in leukemia initiating cells (LICs) from samples before sorafenib treatment. LICs bearing the D835 mutant have expanded during sorafenib treatment and dominated during the subsequent clinical resistance. These results suggest that sorafenib have selected more aggressive sorafenib-resistant subclones carrying both FLT3-ITD and D835 mutations. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [50], [51] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Missense mutation | p.D835H |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vivo Model | A retrospective survey in conducting clinical studies | Homo sapiens | ||
| Experiment for Molecule Alteration |
DNA sequencing assay | |||
| Experiment for Drug Resistance |
Aldefluor activity analysis | |||
| Mechanism Description | Both ITD and tyrosine kinase domain mutations at D835 were identified in leukemia initiating cells (LICs) from samples before sorafenib treatment. LICs bearing the D835 mutant have expanded during sorafenib treatment and dominated during the subsequent clinical resistance. These results suggest that sorafenib have selected more aggressive sorafenib-resistant subclones carrying both FLT3-ITD and D835 mutations. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [51] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Missense mutation | p.F691L |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vivo Model | A retrospective survey in conducting clinical studies | Homo sapiens | ||
| Experiment for Molecule Alteration |
Deep amplicon sequencing assay | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | In this study, we report the clinical activity of sequential therapy with sorafenib and sunitinib in children with FLT3-ITD-positive AML and the emergence of polyclonal secondary FLT3 TkD mutations during TkI therapy as identified by deep amplicon sequencing. | |||
| Key Molecule: Tyrosine-protein kinase UFO (AXL) | [52] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Axl signalling pathway | Regulation | N.A. | |
| In Vitro Model | MOLM-13/sor cells | Blood | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay | |||
| Experiment for Drug Resistance |
Apoptosis assay | |||
| Mechanism Description | Sorafenib-resistant MOLM-13/sor cells have increased protein levels of FLT3 and Axl signaling pathways. These results suggest that activated FLT3-ITD signaling, Axl signaling, and protein translation contribute to sorafenib resistance. | |||
| Key Molecule: Tyrosine-protein kinase receptor UFO (AXL) | [52] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Phosphorylation | Up-regulation |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Axl signalling pathway | Regulation | N.A. | |
| In Vitro Model | MOLM-13/sor cells | Blood | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
Western blot assay | |||
| Experiment for Drug Resistance |
Apoptosis assay | |||
| Mechanism Description | Sorafenib-resistant MOLM-13/sor cells have increased protein levels of FLT3 and Axl signaling pathways. These results suggest that activated FLT3-ITD signaling, Axl signaling, and protein translation contribute to sorafenib resistance. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [52] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Mutation | D1194A |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | FLT3-ITD signalling pathway | Regulation | N.A. | |
| In Vitro Model | MOLM-13/sor cells | Blood | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
WES assay | |||
| Experiment for Drug Resistance |
Apoptosis assay | |||
| Mechanism Description | Sorafenib-resistant MOLM-13/sor cells have increased protein levels of FLT3 and Axl signaling pathways. These results suggest that activated FLT3-ITD signaling, Axl signaling, and protein translation contribute to sorafenib resistance. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [52] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sorafenib | |||
| Molecule Alteration | Mutation | Rv1173; c.-32 A?>?G |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | FLT3-ITD signalling pathway | Regulation | N.A. | |
| In Vitro Model | MOLM-13/sor cells | Blood | Homo sapiens (Human) | N.A. |
| Experiment for Molecule Alteration |
WES assay | |||
| Experiment for Drug Resistance |
Apoptosis assay | |||
| Mechanism Description | Sorafenib-resistant MOLM-13/sor cells have increased protein levels of FLT3 and Axl signaling pathways. These results suggest that activated FLT3-ITD signaling, Axl signaling, and protein translation contribute to sorafenib resistance. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [51] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sunitinib | |||
| Molecule Alteration | Missense mutation | p.D835Y |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vivo Model | A retrospective survey in conducting clinical studies | Homo sapiens | ||
| Experiment for Molecule Alteration |
Deep amplicon sequencing assay | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | In this study, we report the clinical activity of sequential therapy with sorafenib and sunitinib in children with FLT3-ITD-positive AML and the emergence of polyclonal secondary FLT3 TkD mutations during TkI therapy as identified by deep amplicon sequencing. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [49] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sunitinib | |||
| Molecule Alteration | Missense mutation | p.F691 |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Experiment for Molecule Alteration |
FISH assay; Comparative genomic hybridization array assay; Single nucleotide polymorphism array assay; PCR; Next-generation sequencing assay; Sanger sequencing assay | |||
| Experiment for Drug Resistance |
Southern blot analysis; Spectral karyotyping assay | |||
| Mechanism Description | FLT3-mutated patients treated with AC220, sorafenib, or sunitinib commonly relapse with new, resistant FLT3 D835 or F691 mutations within the preexisting FLT3-ITD allele, and one third of the patients who discontinued therapy for any reason also have acquired such mutations. | |||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [49] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Sunitinib | |||
| Molecule Alteration | Missense mutation | p.D835 |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Experiment for Molecule Alteration |
FISH assay; Comparative genomic hybridization array assay; Single nucleotide polymorphism array assay; PCR; Next-generation sequencing assay; Sanger sequencing assay | |||
| Experiment for Drug Resistance |
Southern blot analysis; Spectral karyotyping assay | |||
| Mechanism Description | FLT3-mutated patients treated with AC220, sorafenib, or sunitinib commonly relapse with new, resistant FLT3 D835 or F691 mutations within the preexisting FLT3-ITD allele, and one third of the patients who discontinued therapy for any reason also have acquired such mutations. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Diphthamide biosynthesis 1 (DPH1) | [53] | |||
| Resistant Disease | Blastic plasmacytoid dendritic cell neoplasm [ICD-11: 2A60.5] | |||
| Resistant Drug | Tagraxofusp | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Jurkat cells | Pleural effusion | Homo sapiens (Human) | CVCL_0065 |
| SAOS-2 cells | Bone marrow | Homo sapiens (Human) | CVCL_0548 | |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| In Vivo Model | NSG mouse xenograft model | Mus musculus | ||
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
MTT assay | |||
| Mechanism Description | Loss of DPH1 is sufficient to confer relative tagraxofusp resistance in AML cells. CpGs further upstream, between -300 and -80 bases from the transcription start site (TSS), showed no significant change in methylation, suggesting that increased DPH1-promoter methylation associated with tagraxofusp resistance may confer a specific advantage. Given this finding, we hypothesized that azacitidine, a DNA methyltransferase inhibitor or DNA hypomethylating agent (HMA) might reverse resistance-associated DPH1 hypermethylation and restore DPH1 expression. | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Histone-lysine N-methyltransferase EZH2 (EZH2) | [54] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Tazemetostat | |||
| Molecule Alteration | Complex-indel | p.T678_R679delinsKK (c.2032_2037delinsAAGAAG) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | RN2c cells | Blood | Mus musculus (Mouse) | N.A. |
| RN2 cells | Blood | Mus musculus (Mouse) | N.A. | |
| Plat-E cells | Fetal kidney | Homo sapiens (Human) | CVCL_B488 | |
| Experiment for Molecule Alteration |
RT-PCR | |||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | |||||||||||||
|
|
|||||||||||||
| Key Molecule: Cytosolic purine 5'-nucleotidase (NT5C2) | [27], [41] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Thioguanine | ||||||||||||
| Molecule Alteration | Missense mutation | p.R238W (c.c712t) |
|||||||||||
| Wild Type Structure | Method: X-ray diffraction | Resolution: 1.70 Ã… | |||||||||||
| Mutant Type Structure | Method: X-ray diffraction | Resolution: 1.84 Ã… | |||||||||||
| Download The Information of Sequence | Download The Structure File | ||||||||||||
-
-
M
-
G
-
S
-
S
-
H
-
H
-
H
-
H
-10
|
-
H
-
H
-
S
-
S
-
G
-
L
-
V
-
P
-
R
-
G
0
|
-
S
-
M
-
S
T
T
S
S
W
W
S
S
D
D
R
R
L
L
10
|
Q
Q
N
N
A
A
A
A
D
D
M
M
P
P
A
A
N
N
M
M
20
|
D
D
K
K
H
H
A
A
L
L
K
K
K
K
Y
Y
R
R
R
R
30
|
E
E
A
A
Y
Y
H
H
R
R
V
V
F
F
V
V
N
N
R
R
40
|
S
S
L
L
A
A
M
M
E
E
K
K
I
I
K
K
C
C
F
F
50
|
G
G
F
F
D
D
M
M
D
D
Y
Y
T
T
L
L
A
A
V
V
60
|
Y
Y
K
K
S
S
P
P
E
E
Y
Y
E
E
S
S
L
L
G
G
70
|
F
F
E
E
L
L
T
T
V
V
E
E
R
R
L
L
V
V
S
S
80
|
I
I
G
G
Y
Y
P
P
Q
Q
E
E
L
L
L
L
S
S
F
F
90
|
A
A
Y
Y
D
D
S
S
T
T
F
F
P
P
T
T
R
R
G
G
100
|
L
L
V
V
F
F
D
D
T
T
L
L
Y
Y
G
G
N
N
L
L
110
|
L
L
K
K
V
V
D
D
A
A
Y
Y
G
G
N
N
L
L
L
L
120
|
V
V
C
C
A
A
H
H
G
G
F
F
N
N
F
F
I
I
R
R
130
|
G
G
P
P
E
E
T
T
R
R
E
E
Q
Q
Y
Y
P
P
N
N
140
|
K
K
F
F
I
I
Q
Q
R
R
D
D
D
D
T
T
E
E
R
R
150
|
F
F
Y
Y
I
I
L
L
N
N
T
T
L
L
F
F
N
N
L
L
160
|
P
P
E
E
T
T
Y
Y
L
L
L
L
A
A
C
C
L
L
V
V
170
|
D
D
F
F
F
F
T
T
N
N
C
C
P
P
R
R
Y
Y
T
T
180
|
S
S
C
C
E
E
T
T
G
G
F
F
K
K
D
D
G
G
D
D
190
|
L
L
F
F
M
M
S
S
Y
Y
R
R
S
S
M
M
F
F
Q
Q
200
|
D
D
V
V
R
R
D
D
A
A
V
V
D
D
W
W
V
V
H
H
210
|
Y
Y
K
K
G
G
S
S
L
L
K
K
E
E
K
K
T
T
V
V
220
|
E
E
N
N
L
L
E
E
K
K
Y
Y
V
V
V
V
K
K
D
D
230
|
G
G
K
K
L
L
P
P
L
L
L
L
L
L
S
S
R
W
M
M
240
|
K
K
E
E
V
V
G
G
K
K
V
V
F
F
L
L
A
A
T
T
250
|
N
N
S
S
D
D
Y
Y
K
K
Y
Y
T
T
D
D
K
K
I
I
260
|
M
M
T
T
Y
Y
L
L
F
F
D
D
F
F
P
P
H
H
G
G
270
|
P
P
K
K
P
P
G
G
S
S
S
S
H
H
R
R
P
P
W
W
280
|
Q
Q
S
S
Y
Y
F
F
D
D
L
L
I
I
L
L
V
V
D
D
290
|
A
A
R
R
K
K
P
P
L
L
F
F
F
F
G
G
E
E
G
G
300
|
T
T
V
V
L
L
R
R
Q
Q
V
V
D
D
T
T
K
K
T
T
310
|
G
G
K
K
L
L
K
K
I
I
G
G
T
T
Y
Y
T
T
G
G
320
|
P
P
L
L
Q
Q
H
H
G
G
I
I
V
V
Y
Y
S
S
G
G
330
|
G
G
S
S
S
S
D
D
T
T
I
I
C
C
D
D
L
L
L
L
340
|
G
G
A
A
K
K
G
G
K
K
D
D
I
I
L
L
Y
Y
I
I
350
|
G
G
D
D
H
H
I
I
F
F
G
G
D
D
I
I
L
L
K
K
360
|
S
S
K
K
K
K
R
R
Q
Q
G
G
W
W
R
R
T
T
F
F
370
|
L
L
V
V
I
I
P
P
E
E
L
L
A
A
Q
Q
E
E
L
L
380
|
H
H
V
V
W
W
T
T
D
D
K
K
S
S
S
S
L
L
F
F
390
|
E
E
E
E
L
L
Q
Q
S
S
L
L
D
D
I
I
F
F
L
L
400
|
A
A
E
E
L
L
Y
Y
K
K
H
H
L
L
D
D
S
S
S
S
410
|
S
S
N
N
E
E
R
R
P
P
D
D
I
I
S
S
S
S
I
I
420
|
Q
Q
R
R
R
R
I
I
K
K
K
K
V
V
T
T
H
H
D
D
430
|
M
M
D
D
M
M
C
C
Y
Y
G
G
M
M
M
M
G
G
S
S
440
|
L
L
F
F
R
R
S
S
G
G
S
S
R
R
Q
Q
T
T
L
L
450
|
F
F
A
A
S
S
Q
Q
V
V
M
M
R
R
Y
Y
A
A
D
D
460
|
L
L
Y
Y
A
A
A
A
S
S
F
F
I
I
N
N
L
L
L
L
470
|
Y
Y
Y
Y
P
P
F
F
S
S
Y
Y
L
L
F
F
R
R
A
A
480
|
A
A
H
H
V
V
L
L
M
M
P
P
H
H
E
E
S
S
-
T
490
|
-
V
-
E
-
H
-
T
-
H
-
V
-
D
-
I
-
N
-
E
500
|
-
M
-
E
-
S
-
P
-
L
-
A
-
T
-
R
-
N
-
R
510
|
-
T
-
S
-
V
-
D
-
F
-
K
-
D
-
T
-
D
-
Y
520
|
-
K
-
R
-
H
-
Q
-
L
-
T
-
R
-
S
-
I
-
S
530
|
-
E
-
I
-
K
-
P
-
P
-
N
-
L
|
|||||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Experiment for Molecule Alteration |
Next-generation sequencing assay; Exome sequencing assay; Transcriptome sequencing assay; Whole genome sequencing assay; Sanger Sequencing assay | ||||||||||||
| Experiment for Drug Resistance |
Flow cytometry assay | ||||||||||||
| Mechanism Description | Several of these alterations are known to induce a more stem cell-like state (eg, IkZF1) or confer resistance directly to specific chemotherapy agents such as CREBBP and glucocorticoids and mutations in the 5-nucleotidase gene NT5C2 and nucleoside a.logs. Many relapse-acquired lesions are enriched in specific pathways, including B-cell development (IkZF1), tumor suppression (TP53),34 Ras signaling, chromatin modification (CREBBP, SETD2),17 and drug metabolism (NT5C2). | ||||||||||||
| Key Molecule: Cytosolic purine 5'-nucleotidase (NT5C2) | [27], [41] | ||||||||||||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | ||||||||||||
| Resistant Drug | Thioguanine | ||||||||||||
| Molecule Alteration | Missense mutation | p.S445F (c.c1334t) |
|||||||||||
| Experimental Note | Identified from the Human Clinical Data | ||||||||||||
| Experiment for Molecule Alteration |
Next-generation sequencing assay; Exome sequencing assay; Transcriptome sequencing assay; Whole genome sequencing assay; Sanger Sequencing assay | ||||||||||||
| Experiment for Drug Resistance |
Flow cytometry assay | ||||||||||||
| Mechanism Description | Several of these alterations are known to induce a more stem cell-like state (eg, IkZF1) or confer resistance directly to specific chemotherapy agents such as CREBBP and glucocorticoids and mutations in the 5-nucleotidase gene NT5C2 and nucleoside a.logs. Many relapse-acquired lesions are enriched in specific pathways, including B-cell development (IkZF1), tumor suppression (TP53),34 Ras signaling, chromatin modification (CREBBP, SETD2),17 and drug metabolism (NT5C2). | ||||||||||||
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: ZBTB16-RARA fusion protein (ZBTB16-RARA) | [55] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Tretinoin | |||
| Molecule Alteration | Structural mutation | Structural variation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | AKT/PI3 signaling pathway | Activation | hsa04151 | |
| MAPK signaling pathway | Activation | hsa04010 | ||
| STAT signaling pathway | Activation | hsa04630 | ||
| Experiment for Molecule Alteration |
Next-generation sequencing assay | |||
| Mechanism Description | However, rarer variant translocations such as t(11;17)(q23;q21); ZBTB16-RARA or t(17;17)(q21;q21); STAT5B-RARA may result in resistance to ATRA. | |||
| Key Molecule: STAT5B-RARA fusion protein (STAT5B-RARA) | [55] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Tretinoin | |||
| Molecule Alteration | Structural mutation | Structural variation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | AKT/PI3 signaling pathway | Activation | hsa04151 | |
| MAPK signaling pathway | Activation | hsa04010 | ||
| STAT signaling pathway | Activation | hsa04630 | ||
| Experiment for Molecule Alteration |
Next-generation sequencing assay | |||
| Mechanism Description | However, rarer variant translocations such as t(11;17)(q23;q21); ZBTB16-RARA or t(17;17)(q21;q21); STAT5B-RARA may result in resistance to ATRA. | |||
|
|
||||
| Key Molecule: t(17;17)(q21;q21) (Unclear) | [55] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Tretinoin | |||
| Molecule Alteration | Structural mutation | Structural variation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | AKT/PI3 signaling pathway | Activation | hsa04151 | |
| MAPK signaling pathway | Activation | hsa04010 | ||
| STAT signaling pathway | Activation | hsa04630 | ||
| Experiment for Molecule Alteration |
Next-generation sequencing assay | |||
| Mechanism Description | However, rarer variant translocations such as t(11;17)(q23;q21); ZBTB16-RARA or t(17;17)(q21;q21); STAT5B-RARA may result in resistance to ATRA. | |||
| Key Molecule: t(11;17)(q23;q21) (Unclear) | [55] | |||
| Resistant Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Resistant Drug | Tretinoin | |||
| Molecule Alteration | Structural mutation | Structural variation |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| Cell Pathway Regulation | AKT/PI3 signaling pathway | Activation | hsa04151 | |
| MAPK signaling pathway | Activation | hsa04010 | ||
| STAT signaling pathway | Activation | hsa04630 | ||
| Experiment for Molecule Alteration |
Next-generation sequencing assay | |||
| Mechanism Description | However, rarer variant translocations such as t(11;17)(q23;q21); ZBTB16-RARA or t(17;17)(q21;q21); STAT5B-RARA may result in resistance to ATRA. | |||
Clinical Trial Drug(s)
3 drug(s) in total
| Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Endoplasmic reticulum chaperone BiP (HSPA5) | [4] | |||
| Resistant Disease | Adult acute myeloid leukemia [ICD-11: 2A60.1] | |||
| Resistant Drug | Trichostatin A | |||
| Molecule Alteration | Expression | Up-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 7.36E-14 Fold-change: 6.88E-02 Z-score: 7.87E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Inhibition | hsa04210 | |
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
Flow cytometry assay | |||
| Mechanism Description | GRP78 up-regulation is a major contributor to tumorigenesis and therapeutic resistance, miR-30d, miR-181a and miR-199a-5p regulate GRP78 and that their decreased expression in tumor cells results in increased GRP78 levels, which in turn promotes tumorigenesis and therapeutic resistance. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Zinc finger protein PLAG1 (PLAG1) | [8] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | TRAIL | |||
| Molecule Alteration | Expression | Down-regulation |
||
| Differential expression of the molecule in resistant disease | ||||
| Classification of Disease | Acute myeloid leukemia [ICD-11: 2A60] | |||
| The Specified Disease | Acute myelocytic leukemia | |||
| The Studied Tissue | Bone marrow | |||
| The Expression Level of Disease Section Compare with the Healthy Individual Tissue | p-value: 1.54E-01 Fold-change: -2.99E-02 Z-score: -1.43E+00 |
|||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| Cell Pathway Regulation | Cell apoptosis | Activation | hsa04210 | |
| Cell proliferation | Inhibition | hsa05200 | ||
| In Vitro Model | HL60 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0002 |
| K562 cells | Blood | Homo sapiens (Human) | CVCL_0004 | |
| K562/A02 cells | Blood | Homo sapiens (Human) | CVCL_0368 | |
| NB4 cells | Bone marrow | Homo sapiens (Human) | CVCL_0005 | |
| HL-60/ADR cells | Blood | Homo sapiens (Human) | CVCL_0304 | |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
CCK8 assay | |||
| Mechanism Description | miR-424 and miR-27a increase TRAIL sensitivity of acute myeloid leukemia by targeting PLAG1. | |||
| Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
|
|
||||
| Key Molecule: Receptor-type tyrosine-protein kinase FLT3 (FLT3) | [56] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Crenolanib | |||
| Molecule Alteration | Missense mutation | p.D835H (c.2503G>C) |
||
| Experimental Note | Identified from the Human Clinical Data | |||
| In Vitro Model | Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 |
| Experiment for Molecule Alteration |
Western blot analysis | |||
| Experiment for Drug Resistance |
Colony assays; Plasma inhibitory assay | |||
| Key Molecule: Mast/stem cell growth factor receptor Kit (KIT) | [37] | |||
| Sensitive Disease | Acute myeloid leukemia [ICD-11: 2A60.0] | |||
| Sensitive Drug | Crenolanib | |||
| Molecule Alteration | Missense mutation | p.D816V (c.2447A>T) |
||
| Experimental Note | Revealed Based on the Cell Line Data | |||
| In Vitro Model | Ba/F3 cells | Colon | Homo sapiens (Human) | CVCL_0161 |
| MV4-11 cells | Peripheral blood | Homo sapiens (Human) | CVCL_0064 | |
| MOLM14 cells | Peripheral blood | Homo sapiens (Human) | CVCL_7916 | |
| In Vivo Model | Female NCr-nude mouse model | Mus musculus | ||
| Experiment for Drug Resistance |
CellTiter-Glo assay; IC50 assay | |||
References
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