General Information of the Disease (ID: DIS00036)
Name
Bacterial meningitis
ICD
ICD-11: 1D02
Resistance Map
Type(s) of Resistant Mechanism of This Disease
  ADTT: Aberration of the Drug's Therapeutic Target
  DISM: Drug Inactivation by Structure Modification
  IDUE: Irregularity in Drug Uptake and Drug Efflux
  UAPP: Unusual Activation of Pro-survival Pathway
Drug Resistance Data Categorized by Drug
Approved Drug(s)
8 drug(s) in total
Click to Show/Hide the Full List of Drugs
Colistin
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Unusual Activation of Pro-survival Pathway (UAPP) Click to Show/Hide
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Frameshift mutation
c.90del
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii ATCC 19606 575584
Acinetobacter baumannii FADDI008 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Missense mutation
p.H159D
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii AL1844 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Missense mutation
c.700C>T
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii AL1845 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Missense mutation
p.G68D
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii AL1846 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Frameshift mutation
c.391_421del
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii ATCC 19606 575584
Acinetobacter baumannii FADDI008 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Missense mutation
p.Q72K
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii AL1848 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Frameshift mutation
c.76_78del
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii ATCC 19606 575584
Acinetobacter baumannii FADDI008 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Key Molecule: Multifunctional fusion protein (LPXA) [1], [2]
Resistant Disease Acinetobacter meningitis [ICD-11: 1D01.1]
Molecule Alteration Frameshift mutation
c.364_809del
Resistant Drug Colistin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Acinetobacter baumannii ATCC 19606 575584
Acinetobacter baumannii FADDI008 470
Experiment for
Molecule Alteration
Whole genome sequence assay
Experiment for
Drug Resistance
Broth microdilution method assay
Mechanism Description A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS.
Erythromycin
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Aberration of the Drug's Therapeutic Target (ADTT) Click to Show/Hide
Key Molecule: 23S rRNA (cytidine-2'-O)-methyltransferase TlyA (TLYA) [3]
Resistant Disease Mycoplasma pneumoniae infection [ICD-11: 1D01.3]
Molecule Alteration Missense mutation
p.A2063G+p.A2064G+p.A2617G
Resistant Drug Erythromycin
Experimental Note Discovered Using In-vivo Testing Model
In Vitro Model Mycoplasma pneumoniae strain 2014
Experiment for
Drug Resistance
MIC assay
Mechanism Description It has been confirmed that drug resistance to macrolide antibiotics of MP is mainly related to the mutation of Gene 23SrRNA in Area V, most commonly in the mutation of A2063G and followed by A2064G and A2617G. Rarely, mutation of ribosomal protein L4 or L22 may induce drug resistance to macrolide antibiotics.
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Inherence
Resistant Drug Erythromycin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci.
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Sensitive Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Truncated mutantion
Disruption (nt 1251 to 1879)
Sensitive Drug Erythromycin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci.
Macrolides
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Inherence
Resistant Drug Macrolides
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci.
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Sensitive Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Truncated mutantion
Disruption (nt 1251 to 1879)
Sensitive Drug Macrolides
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci.
Plazomicin
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Drug Inactivation by Structure Modification (DISM) Click to Show/Hide
Key Molecule: Aminoglycoside phosphotransferase (APH) [5]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Inherence
Resistant Drug Plazomicin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Enterococcus faecium SF11770 1352
Escherichia coli kHE5-2a 562
Escherichia coli strain DH10b(pMW119) 316385
Experiment for
Molecule Alteration
PCR
Mechanism Description High-level gentamicin resistance (MIC >= 500 ug/ml) in enterococci is predominantly mediated by aac(6')-Ie-aph(2")-Ia, which encodes the bifunctional aminoglycoside-modifying enzyme AAC(6')-APH(2"). Found less commonly is aph(2")-Id, another gene recently reported to be associated with high-level gentamicin resistance in enterococci.
Quinupristin
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Inherence
Resistant Drug Quinupristin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci.
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Sensitive Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Truncated mutantion
Disruption (nt 1251 to 1879)
Sensitive Drug Quinupristin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci.
Teicoplanin
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Drug Inactivation by Structure Modification (DISM) Click to Show/Hide
Key Molecule: D-alanine ligase (vanD5) [6]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Up-regulation
Resistant Drug Teicoplanin
Experimental Note Identified from the Human Clinical Data
In Vitro Model Enterococcus faecium isolates 1352
Experiment for
Molecule Alteration
Whole-genome sequencing assay
Experiment for
Drug Resistance
Broth dilution assay
Mechanism Description Glycopeptide (vancomycin and teicoplanin) resistance is attributed to the acquisition of vancomycin resistance (van) genes. Nine van genes that encode a D-Ala:D-Lac or D-Ala:D-Ser ligase (vanA, vanB, vanC, vanD, vanE, vanG, vanL, vanM and vanN) have been identified in Enterococcus spp. d-Alanyl:d-lactate (d-Ala:d-Lac) and d-alanyl:d-serine ligases are key enzymes in vancomycin resistance of Gram-positive cocci. They catalyze a critical step in the synthesis of modified peptidoglycan precursors that are low binding affinity targets for vancomycin.
Tetracycline
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: Tetracycline resistance protein TetU (TETU) [7]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Inherence
Resistant Drug Tetracycline
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecalis strain JH2-2 1320322
Enterococcus faecium strain CH2 1352
Experiment for
Molecule Alteration
DNA Hybridization assay
Experiment for
Drug Resistance
Tube dilution method assay
Mechanism Description PkQ10, a 1.9-kb plasmid carrying a novel Tc resistance determinant, was isolated from one of the isolates. The nucleotide sequence of this plasmid revealed an open reading frame corresponding to an 11.8-kDa protein and containing 105 amino acid residues. There was some limited similarity between this protein andtet(M),tet(O),tet(Q),tet(S),tetB(P), andotr(A), which overlapped, but did not include, the consensus GTP-binding sequences. The low-level, Tc-resistant determinant of pkQ10, namedtet(U), does not appear to correspond to any other known Tc resistance determinant.
Zithromax
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Drug Resistance Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Resistant Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Expression
Inherence
Resistant Drug Zithromax
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci.
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms
       Irregularity in Drug Uptake and Drug Efflux (IDUE) Click to Show/Hide
Key Molecule: MsrC (MSRC) [4]
Sensitive Disease Enterococcus faecium meningitis [ICD-11: 1D01.2]
Molecule Alteration Truncated mutantion
Disruption (nt 1251 to 1879)
Sensitive Drug Zithromax
Experimental Note Identified from the Human Clinical Data
In Vitro Model Escherichia coli 668369
Enterococcus faecium TX2465 1352
Escherichia coli TX1330 668369
Escherichia coli TX2046 668369
Escherichia coli TX2597 668369
Experiment for
Molecule Alteration
Southern blotting assay
Experiment for
Drug Resistance
Twofold dilutions assay
Mechanism Description Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci.
References
Ref 1 Colistin resistance in Acinetobacter baumannii is mediated by complete loss of lipopolysaccharide production. Antimicrob Agents Chemother. 2010 Dec;54(12):4971-7. doi: 10.1128/AAC.00834-10. Epub 2010 Sep 20.
Ref 2 Biological cost of different mechanisms of colistin resistance and their impact on virulence in Acinetobacter baumannii. Antimicrob Agents Chemother. 2014;58(1):518-26. doi: 10.1128/AAC.01597-13. Epub 2013 Nov 4.
Ref 3 Serological Analysis and Drug Resistance of Chlamydia pneumoniae and Mycoplasma pneumoniae in 4500 Healthy Subjects in Shenzhen, China .Biomed Res Int. 2017;2017:3120138. doi: 10.1155/2017/3120138. Epub 2017 Sep 19. 10.1155/2017/3120138
Ref 4 Disruption of an Enterococcus faecium species-specific gene, a homologue of acquired macrolide resistance genes of staphylococci, is associated with an increase in macrolide susceptibility. Antimicrob Agents Chemother. 2001 Jan;45(1):263-6. doi: 10.1128/AAC.45.1.263-266.2001.
Ref 5 Detection of the high-level aminoglycoside resistance gene aph(2")-Ib in Enterococcus faecium. Antimicrob Agents Chemother. 2000 Oct;44(10):2876-9. doi: 10.1128/AAC.44.10.2876-2879.2000.
Ref 6 Emergence of vancomycin- and teicoplanin-resistant Enterococcus faecium via vanD5-harbouring large genomic island .J Antimicrob Chemother. 2020 Sep 1;75(9):2411-2415. doi: 10.1093/jac/dkaa220. 10.1093/jac/dkaa220
Ref 7 A novel tetracycline-resistant determinant, tet(U), is encoded on the plasmid pKq10 in Enterococcus faecium. Plasmid. 1996 Mar;35(2):71-80. doi: 10.1006/plas.1996.0009.

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