Disease Information
General Information of the Disease (ID: DIS00036)
Name |
Bacterial meningitis
|
---|---|
ICD |
ICD-11: 1D02
|
Resistance Map |
Type(s) of Resistant Mechanism of This Disease
ADTT: Aberration of the Drug's Therapeutic Target
DISM: Drug Inactivation by Structure Modification
IDUE: Irregularity in Drug Uptake and Drug Efflux
UAPP: Unusual Activation of Pro-survival Pathway
Drug Resistance Data Categorized by Drug
Approved Drug(s)
8 drug(s) in total
Colistin
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Unusual Activation of Pro-survival Pathway (UAPP) | ||||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Frameshift mutation | c.90del |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii ATCC 19606 | 575584 | ||
Acinetobacter baumannii FADDI008 | 470 | |||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Missense mutation | p.H159D |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii AL1844 | 470 | ||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Missense mutation | c.700C>T |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii AL1845 | 470 | ||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Missense mutation | p.G68D |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii AL1846 | 470 | ||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Frameshift mutation | c.391_421del |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii ATCC 19606 | 575584 | ||
Acinetobacter baumannii FADDI008 | 470 | |||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Missense mutation | p.Q72K |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii AL1848 | 470 | ||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Frameshift mutation | c.76_78del |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii ATCC 19606 | 575584 | ||
Acinetobacter baumannii FADDI008 | 470 | |||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. | |||
Key Molecule: Multifunctional fusion protein (LPXA) | [1], [2] | |||
Resistant Disease | Acinetobacter meningitis [ICD-11: 1D01.1] | |||
Molecule Alteration | Frameshift mutation | c.364_809del |
||
Resistant Drug | Colistin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Acinetobacter baumannii ATCC 19606 | 575584 | ||
Acinetobacter baumannii FADDI008 | 470 | |||
Experiment for Molecule Alteration |
Whole genome sequence assay | |||
Experiment for Drug Resistance |
Broth microdilution method assay | |||
Mechanism Description | A critical first step in the action of polymyxins is the electrostatic interaction between the positively charged peptide and the negatively charged lipid A, the endotoxic component of lipopolysaccharide (LPS).A. baumannii type strain ATCC 19606, colistin-resistant variants contain mutations within genes essential for lipid A biosynthesis (either lpxA, lpxC, or lpxD) and that these strains have lost the ability to produce lipid A and therefore LPS. |
Erythromycin
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Aberration of the Drug's Therapeutic Target (ADTT) | ||||
Key Molecule: 23S rRNA (cytidine-2'-O)-methyltransferase TlyA (TLYA) | [3] | |||
Resistant Disease | Mycoplasma pneumoniae infection [ICD-11: 1D01.3] | |||
Molecule Alteration | Missense mutation | p.A2063G+p.A2064G+p.A2617G |
||
Resistant Drug | Erythromycin | |||
Experimental Note | Discovered Using In-vivo Testing Model | |||
In Vitro Model | Mycoplasma pneumoniae strain | 2014 | ||
Experiment for Drug Resistance |
MIC assay | |||
Mechanism Description | It has been confirmed that drug resistance to macrolide antibiotics of MP is mainly related to the mutation of Gene 23SrRNA in Area V, most commonly in the mutation of A2063G and followed by A2064G and A2617G. Rarely, mutation of ribosomal protein L4 or L22 may induce drug resistance to macrolide antibiotics. | |||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Inherence |
||
Resistant Drug | Erythromycin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci. |
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Sensitive Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Truncated mutantion | Disruption (nt 1251 to 1879) |
||
Sensitive Drug | Erythromycin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. |
Macrolides
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Inherence |
||
Resistant Drug | Macrolides | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci. |
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Sensitive Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Truncated mutantion | Disruption (nt 1251 to 1879) |
||
Sensitive Drug | Macrolides | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. |
Plazomicin
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Drug Inactivation by Structure Modification (DISM) | ||||
Key Molecule: Aminoglycoside phosphotransferase (APH) | [5] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Inherence |
||
Resistant Drug | Plazomicin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Enterococcus faecium SF11770 | 1352 | ||
Escherichia coli kHE5-2a | 562 | |||
Escherichia coli strain DH10b(pMW119) | 316385 | |||
Experiment for Molecule Alteration |
PCR | |||
Mechanism Description | High-level gentamicin resistance (MIC >= 500 ug/ml) in enterococci is predominantly mediated by aac(6')-Ie-aph(2")-Ia, which encodes the bifunctional aminoglycoside-modifying enzyme AAC(6')-APH(2"). Found less commonly is aph(2")-Id, another gene recently reported to be associated with high-level gentamicin resistance in enterococci. |
Quinupristin
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Inherence |
||
Resistant Drug | Quinupristin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci. |
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Sensitive Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Truncated mutantion | Disruption (nt 1251 to 1879) |
||
Sensitive Drug | Quinupristin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. |
Teicoplanin
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Drug Inactivation by Structure Modification (DISM) | ||||
Key Molecule: D-alanine ligase (vanD5) | [6] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Up-regulation |
||
Resistant Drug | Teicoplanin | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Enterococcus faecium isolates | 1352 | ||
Experiment for Molecule Alteration |
Whole-genome sequencing assay | |||
Experiment for Drug Resistance |
Broth dilution assay | |||
Mechanism Description | Glycopeptide (vancomycin and teicoplanin) resistance is attributed to the acquisition of vancomycin resistance (van) genes. Nine van genes that encode a D-Ala:D-Lac or D-Ala:D-Ser ligase (vanA, vanB, vanC, vanD, vanE, vanG, vanL, vanM and vanN) have been identified in Enterococcus spp. d-Alanyl:d-lactate (d-Ala:d-Lac) and d-alanyl:d-serine ligases are key enzymes in vancomycin resistance of Gram-positive cocci. They catalyze a critical step in the synthesis of modified peptidoglycan precursors that are low binding affinity targets for vancomycin. |
Tetracycline
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: Tetracycline resistance protein TetU (TETU) | [7] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Inherence |
||
Resistant Drug | Tetracycline | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecalis strain JH2-2 | 1320322 | |||
Enterococcus faecium strain CH2 | 1352 | |||
Experiment for Molecule Alteration |
DNA Hybridization assay | |||
Experiment for Drug Resistance |
Tube dilution method assay | |||
Mechanism Description | PkQ10, a 1.9-kb plasmid carrying a novel Tc resistance determinant, was isolated from one of the isolates. The nucleotide sequence of this plasmid revealed an open reading frame corresponding to an 11.8-kDa protein and containing 105 amino acid residues. There was some limited similarity between this protein andtet(M),tet(O),tet(Q),tet(S),tetB(P), andotr(A), which overlapped, but did not include, the consensus GTP-binding sequences. The low-level, Tc-resistant determinant of pkQ10, namedtet(U), does not appear to correspond to any other known Tc resistance determinant. |
Zithromax
Drug Resistance Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Resistant Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Expression | Inherence |
||
Resistant Drug | Zithromax | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | The complete sequence (1,479 nucleotides) of msrC, part of which was recently reported by others using a different strain, was determined. This gene was found in 233 of 233 isolates of Enterococcus faecium but in none of 265 other enterococci. Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. This endogenous, species-specific gene of E. faecium is 53% identical to msr(A), suggesting that it may be a remote progenitor of the acquired macrolide resistance gene found in some isolates of staphylococci. |
Drug Sensitivity Data Categorized by Their Corresponding Mechanisms | ||||
Irregularity in Drug Uptake and Drug Efflux (IDUE) | ||||
Key Molecule: MsrC (MSRC) | [4] | |||
Sensitive Disease | Enterococcus faecium meningitis [ICD-11: 1D01.2] | |||
Molecule Alteration | Truncated mutantion | Disruption (nt 1251 to 1879) |
||
Sensitive Drug | Zithromax | |||
Experimental Note | Identified from the Human Clinical Data | |||
In Vitro Model | Escherichia coli | 668369 | ||
Enterococcus faecium TX2465 | 1352 | |||
Escherichia coli TX1330 | 668369 | |||
Escherichia coli TX2046 | 668369 | |||
Escherichia coli TX2597 | 668369 | |||
Experiment for Molecule Alteration |
Southern blotting assay | |||
Experiment for Drug Resistance |
Twofold dilutions assay | |||
Mechanism Description | Disruption of msrC was associated with a two- to eightfold decrease in MICs of erythromycin azithromycin, tylosin, and quinupristin, suggesting that it may explain in part the apparent greater intrinsic resistance to macrolides of isolates of E. faecium relative to many streptococci. |
References
If you find any error in data or bug in web service, please kindly report it to Dr. Sun and Dr. Zhang.